PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00040012001 | ||||||||
Common Name | GSBRNA2T00040012001, LOC106434034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 739aa MW: 81415.1 Da PI: 6.5843 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.9e-19 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GSBRNA2T00040012001 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP | |||||||
2 | START | 193.6 | 9.3e-61 | 159 | 367 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d+++W +++++ ++++v+s++ g GSBRNA2T00040012001 159 IADETLTEFISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACGLVGLDPT-RVAEILKDRPCWLRDCRSLDIVNVLSTAngG 247 68899*****************************************************.8888888888*****************999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +l+l++++++a+++l+p Rdf+++Ry+ +++g++vi+++S++++q+ p+ s+++vRae lpSg+li+p+++g+s +++v+h+dl+ + GSBRNA2T00040012001 248 TLELIYMQMYAPTTLAPaRDFWMLRYTSVMEDGSLVICERSLNNTQNGPSmppSPHFVRAEILPSGYLIRPCEGGGSILHIVDHFDLEPW 337 ************************************************99999************************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lrsl++s++ +++t++a+l+++++ GSBRNA2T00040012001 338 SVPEVLRSLYESSTLLAQRTTMAALRYLRQ 367 *************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.499 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-15 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-16 | 15 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.73E-17 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 16 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 9.75E-7 | 67 | 106 | No hit | No description |
PROSITE profile | PS50848 | 26.809 | 149 | 377 | IPR002913 | START domain |
CDD | cd08875 | 4.63E-82 | 153 | 368 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-24 | 157 | 363 | IPR023393 | START-like domain |
SMART | SM00234 | 9.4E-43 | 158 | 368 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-38 | 158 | 369 | No hit | No description |
Pfam | PF01852 | 1.8E-58 | 159 | 367 | IPR002913 | START domain |
Pfam | PF08670 | 2.2E-7 | 691 | 733 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MGGGSNNSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY ENSYFRQHPQ 120 NGNLATTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC TGIAARACGL VGLDPTRVAE ILKDRPCWLR DCRSLDIVNV 240 LSTANGGTLE LIYMQMYAPT TLAPARDFWM LRYTSVMEDG SLVICERSLN NTQNGPSMPP 300 SPHFVRAEIL PSGYLIRPCE GGGSILHIVD HFDLEPWSVP EVLRSLYESS TLLAQRTTMA 360 ALRYLRQISQ EISQPNVSGW GRRPAALRAL SQRLSKGFNE AVNGFSDEGW SMLESDGIDD 420 VTLLMNSSPT KMMMTSSLPF SNGFTSMPSA VLCAKASMLL QNVPPSILLR FLREHRQEWA 480 DNSIDAYSAA AIKAGPCSLP IPRPGSFGGQ VILPLAHTIE NEEFMEVIKL ESLGHYQEDM 540 MMPADVFLLQ MCSGVDENAV ESCAELIFAP IDASFSDDAP IIPSGFRIIP LDTKSEGVSP 600 NRTLDLASAL DVGSRTAGDS CGSRGNTKSV MTIAFQLAFE MHMQENVASM ARQYVRSVIA 660 SVQRVALALS PSSHQLSGGL RPPPASPEAH TLARWISHSY RCYLGVELLK PDGTDLLKSL 720 WHHPDALMCC SLKVLCFH* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00040012001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441292 | 0.0 | AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene). | |||
GenBank | AY099631 | 0.0 | AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013730326.1 | 0.0 | homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A078GUE2 | 0.0 | A0A078GUE2_BRANA; BnaC03g66860D protein | ||||
STRING | Bra034539.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Entrez Gene | 106434034 |