PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00039618001

Common Name

GSBRNA2T00039618001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 515aa MW: 55678 Da PI: 8.2027

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00039618001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.8e-30	217	276	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+ GSBRNA2T00039618001 217 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 276 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	202	278	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	210	278	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	212	278	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	217	277	IPR003657	WRKY domain
Pfam	PF03106	6.1E-27	218	276	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MEVLLKLPTS DSLLTVKDLG SAQIHEAIKG DGDHQELESA KAEMSEVKEE NEKLKGMLKR 60 IENDYKSLKL RFFDVFQQEP ANKPTQDQKV VDLRTELSSL DQEHELVSLS LGRRSSSPSD 120 NTSKKEEKAD AITKEVNSDK KLNEVGLTLG FNNGNDREPN KSLSIVDSLE EASKVTGKRS 180 SPSPPASGGD ADGEAGQQNN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY 240 YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHSHPLPLS ATTMASTTSA AASMLLSGSS 300 SSSAAKIIGN NLYDSSRFIN NSKSFYAPTL HPPLHPTVTL DLTAPQHSST SLPSLNFNKF 360 SNSFQRFPST SLNFSSSSSY TPYPYNNVQF GPSNLGKPVQ NSQSLTETLT KALTSDPSFH 420 LVIAAAISSM VGSNGEQHGP RPSISNSIQQ TTETNNKKGC GGYFNSLLTS NIIANNQTGA 480 FLDQPSSQLP PLSMFKNPSS SSSTASFVNK DEKS*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MEVLLKLPTS DSLLTVKDLG SAQIHEAIKG DGDHQELESA KAEMSEVKEE NEKLKGMLKR  60
IENDYKSLKL RFFDVFQQEP ANKPTQDQKV VDLRTELSSL DQEHELVSLS LGRRSSSPSD  120
NTSKKEEKAD AITKEVNSDK KLNEVGLTLG FNNGNDREPN KSLSIVDSLE EASKVTGKRS  180
SPSPPASGGD ADGEAGQQNN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY  240
YRCTVAPGCP VRKQVQRCAE DMSILITTYE GTHSHPLPLS ATTMASTTSA AASMLLSGSS  300
SSSAAKIIGN NLYDSSRFIN NSKSFYAPTL HPPLHPTVTL DLTAPQHSST SLPSLNFNKF  360
SNSFQRFPST SLNFSSSSSY TPYPYNNVQF GPSNLGKPVQ NSQSLTETLT KALTSDPSFH  420
LVIAAAISSM VGSNGEQHGP RPSISNSIQQ TTETNNKKGC GGYFNSLLTS NIIANNQTGA  480
FLDQPSSQLP PLSMFKNPSS SSSTASFVNK DEKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	204	278	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13616	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00039618001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189232	0.0	AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659902.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	A0A078JFE4	0.0	A0A078JFE4_BRANA; BnaCnng42630D protein
TrEMBL	A0A3P6CXQ8	0.0	A0A3P6CXQ8_BRAOL; Uncharacterized protein
STRING	Bo2g012390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]