PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00039552001 | ||||||||
Common Name | GSBRNA2T00039552001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 419aa MW: 47230.5 Da PI: 5.0311 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 266 | 303 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk+++L+++qV +WF N R + GSBRNA2T00039552001 266 FEHflHPYPKESEKMMLAKQTRLSKNQVANWFINARVR 303 554459******************************88 PP | |||||||
2 | BELL | 112.5 | 2.3e-36 | 156 | 227 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kLl++++eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS hFr+ +dai+e+i GSBRNA2T00039552001 156 ERQELQSKKDKLLTMVDEVDKRYNQYYHQMEALASSFEVVAGFGSAKPYTSVALNRISCHFRSFRDAIKEHI 227 79*******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-45 | 91 | 225 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-44 | 96 | 223 | IPR006563 | POX domain |
SMART | SM00389 | 2.5E-7 | 250 | 311 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-25 | 257 | 313 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.21E-9 | 258 | 308 | No hit | No description |
SuperFamily | SSF46689 | 6.42E-16 | 258 | 314 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-17 | 264 | 303 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.531 | 266 | 307 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MVFIPPTGLQ NLNGDVPVSS SELTFRDGQG LSLSLLGTQI SLPSFHYQQY QSGFTTNPPI 60 SVQETPPFSK EMLLLGQSDP SSGYAEVYNN YNMSSVLRSR YLKPAQVLLD EVVSVEKELN 120 QMRKKKKGEA FNNSANETEG GGGFGGEISI ELSTIERQEL QSKKDKLLTM VDEVDKRYNQ 180 YYHQMEALAS SFEVVAGFGS AKPYTSVALN RISCHFRSFR DAIKEHIQVI REKLGEKGGE 240 LSLDEQQGGE RIPRLSSVSA LRAWLFEHFL HPYPKESEKM MLAKQTRLSK NQVANWFINA 300 RVRLWKPMIE EMYKEEFGDD ASELLTSKSP SSTNQEDSSS QQQEPENTTN VAFSSEPKPD 360 CTSANEDDPQ LHQMNRSADY DSLVNYHGFG VDDYRYIDGN NQQESRFSNG HHLHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-14 | 248 | 311 | 1 | 63 | Homeobox protein Meis2 |
3k2a_B | 8e-14 | 248 | 311 | 1 | 63 | Homeobox protein Meis2 |
4xrm_A | 6e-14 | 253 | 311 | 6 | 63 | Homeobox protein Meis2 |
4xrm_B | 6e-14 | 253 | 311 | 6 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.20069 | 2e-58 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00039552001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 1e-116 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013729468.1 | 0.0 | BEL1-like homeodomain protein 10 isoform X2 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A078JF98 | 0.0 | A0A078JF98_BRANA; BnaC08g19170D protein | ||||
STRING | Bo8g069720.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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