PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00039325001 | ||||||||
Common Name | GSBRNA2T00039325001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 40254.5 Da PI: 6.551 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lvd+++q+G g+W+t ++ g+ R++k+c++rw +yl GSBRNA2T00039325001 14 KGPWTSEEDQKLVDYIQQHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ GSBRNA2T00039325001 67 RGRFSLEEEETIIHLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.203 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.23E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.455 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGRSPCCEKT GLKKGPWTSE EDQKLVDYIQ QHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SLEEEETIIH LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG 120 IDPVTHSPRL DLLDISSILA SSLYNSSSHH VNMSRLMMDA HRQQQQHPLV NPEILKLATS 180 LFSQNQTQTQ NHNQNLNFVV DHDTNTHEHH SVYHQDVNQA GVNQYQTGHQ DYQPCMPPFP 240 NEAQFNDMGH QFNGFGEQAL ASTSNTSVQD CNIPSFNNFA NSSFVLDPSY SDQSFSFANS 300 VLNTPSSSPT TLNSSSTTYI NSSSCNTEDE MESYCSNLVK FDISDFLDVN DFLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00039325001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087252 | 1e-180 | AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022550348.1 | 0.0 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 0.0 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A078JE85 | 0.0 | A0A078JE85_BRANA; BnaC01g41180D protein | ||||
TrEMBL | A0A3N6SZ65 | 0.0 | A0A3N6SZ65_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQ89 | 0.0 | A0A3P6FQ89_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g024170.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-172 | MYB-like 102 |
Publications ? help Back to Top | |||
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