PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00039287001
Common NameGSBRNA2T00039287001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 251aa    MW: 29804.1 Da    PI: 7.4963
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00039287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.12e-24125173452
               RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          + s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk++s+
  GSBRNA2T00039287001 125 KFSREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKLTSI 173
                          67899*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.428109193IPR003035RWP-RK domain
PfamPF020428.2E-21127173IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MADHEHLWSW SESNDYDSFL QEENLFSLLD QSLSFDYNSF VNPFNDLQNE TCLLYFVLRY  60
NILFFIYVYT YVYVHACLDC YTNLLSNFNN HVEPEMEIIL HDGNNTTKET TMQKRRYRGD  120
RLIQKFSRED MKPYFKMPIT KAAKELGVGL TLLKRRCREL GFSRWPHRKL TSIDGLINNL  180
KDHLGKMEGE VNRSKLMNAL EILEAEKKMI EEFPDLEFED KTKRLRQACF KANYKRRRLL  240
CSMSTTSFVS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00039287001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548100.11e-155protein RKD3-like
SwissprotQ9FGD13e-80RKD3_ARATH; Protein RKD3
TrEMBLA0A078JE730.0A0A078JE73_BRANA; BnaC08g48390D protein
STRINGBra037130.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.18e-78RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]