PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00039003001

Common Name

GSBRNA2T00039003001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 454aa MW: 49492.8 Da PI: 6.4591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00039003001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.5e-09	262	309	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq GSBRNA2T00039003001 262 SHSLAERVRREKISERMKLLQELVPGC----NKVTGKALMLDEIINYVQSLQ 309 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.04E-10	256	313	No hit	No description
SuperFamily	SSF47459	6.67E-17	256	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.637	258	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	258	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	262	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-10	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDNELFMNAG VLSHPSEMTS LSSSSPPAML NWASMETHLL EQSITHNVPR DCFFGEKSTE 60 QSIFGSALNS LVSPPPSESN FSGGGAGENY VIRELVGNLG NIGDIYGAPA SFGNGSGSCY 120 AAPMMSSPPL DAFSGDSRFA ERAARFSCLG SRSFNGRRTN GPVAETASIN GEMTRVSSNS 180 ALKPPAGESS GESSRKRKAK SKEHSPSTAS PSPNLSKEVE GKEDSDSKRS RKSQENGENT 240 KSLDPYKDFI HVRARRGQAT DSHSLAERVR REKISERMKL LQELVPGCNK VTGKALMLDE 300 IINYVQSLQR QVEFLSMKLS SVNTRLDFNM DALMSKDIFP SSNNQQVPQL ESSSHILLAD 360 HHSHTLQLNP NDSSNNIMNP METSESRSFN SQLPTLTHLT DSISQFSTYS EDDLHSIIHM 420 GFAQNQIREP NQVHSTSFQG PSNQVPSHMK AEL*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDNELFMNAG VLSHPSEMTS LSSSSPPAML NWASMETHLL EQSITHNVPR DCFFGEKSTE  60
QSIFGSALNS LVSPPPSESN FSGGGAGENY VIRELVGNLG NIGDIYGAPA SFGNGSGSCY  120
AAPMMSSPPL DAFSGDSRFA ERAARFSCLG SRSFNGRRTN GPVAETASIN GEMTRVSSNS  180
ALKPPAGESS GESSRKRKAK SKEHSPSTAS PSPNLSKEVE GKEDSDSKRS RKSQENGENT  240
KSLDPYKDFI HVRARRGQAT DSHSLAERVR REKISERMKL LQELVPGCNK VTGKALMLDE  300
IINYVQSLQR QVEFLSMKLS SVNTRLDFNM DALMSKDIFP SSNNQQVPQL ESSSHILLAD  360
HHSHTLQLNP NDSSNNIMNP METSESRSFN SQLPTLTHLT DSISQFSTYS EDDLHSIIHM  420
GFAQNQIREP NQVHSTSFQG PSNQVPSHMK AEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00039003001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	1e-175	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	1e-175	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	1e-175	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	1e-175	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750563.2	0.0	transcription factor bHLH62
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A078GRM2	0.0	A0A078GRM2_BRANA; BnaC05g44630D protein
STRING	Bo5g141620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]