PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00038812001 | ||||||||
Common Name | GSBRNA2T00038812001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21035.6 Da PI: 4.4246 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.8 | 1.5e-09 | 75 | 100 | 30 | 55 |
AP2 30 rfslgkfgtaeeAakaaiaarkkleg 55 ++lg+f+ta eAa+a+++a+ +l+g GSBRNA2T00038812001 75 LVWLGTFDTAIEAARAYDQAAFRLRG 100 58**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.63E-16 | 63 | 108 | No hit | No description |
SMART | SM00380 | 4.2E-7 | 68 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-5 | 75 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-10 | 75 | 110 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.128 | 76 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-15 | 76 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MATPSEASAL SFIKKHLLDE SSPLPKVTTT NPWIASETIS NFSIFGSFDQ TGFDFSEFET 60 KPEITDLVTH RFTDLVWLGT FDTAIEAARA YDQAAFRLRG SKAIVNFPLE VGTWNQRADV 120 GQNKRKRDGE GEEVTVVAKV LKTEESHAVE TETSSLTAVD DWDLTELLSM PLLSPLSPHP 180 PFGYPQLTVV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00038812001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236791 | 1e-179 | AC236791.1 Brassica napus clone JBr38I20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013655947.1 | 1e-64 | ethylene-responsive transcription factor 6 | ||||
Swissprot | Q8VZ91 | 1e-50 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A078GRZ3 | 1e-135 | A0A078GRZ3_BRANA; BnaCnng05070D protein | ||||
STRING | Bo8g049450.1 | 2e-65 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-39 | ethylene responsive element binding factor 6 |
Publications ? help Back to Top | |||
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