PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00038707001 | ||||||||
Common Name | GSBRNA2T00038707001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 154aa MW: 17475.9 Da PI: 6.5107 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 129.6 | 3.5e-40 | 37 | 153 | 257 | 374 |
GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 + e+l+yy+a+f+s+++ lpr+++eri+vE+++l+ + vn++acegaer++rhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ GSBRNA2T00038707001 37 LHETLSYYTAMFESIDVILPRNHKERINVEQHCLASNNVNIIACEGAERIKRHELLGKWKSRFSMAGFEPYPLSSVVSATIRALLKDYN- 125 6799*************************************************************************************. PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 +gy +ee++g+l+lgW dr Lvs +aW+ GSBRNA2T00038707001 126 NGYGIEERDGALYLGWVDRILVSSCAWK 153 9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.289 | 1 | 134 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-37 | 37 | 153 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MLEGLVARLA TTGSSIYKSL QSREPESYDF LSYDYLLHET LSYYTAMFES IDVILPRNHK 60 ERINVEQHCL ASNNVNIIAC EGAERIKRHE LLGKWKSRFS MAGFEPYPLS SVVSATIRAL 120 LKDYNNGYGI EERDGALYLG WVDRILVSSC AWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-13 | 41 | 153 | 259 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00038707001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006955 | 1e-113 | AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence. | |||
GenBank | AC007211 | 1e-113 | AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence. | |||
GenBank | AF210732 | 1e-113 | AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds. | |||
GenBank | AK175210 | 1e-113 | AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23. | |||
GenBank | AK176099 | 1e-113 | AK176099.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, partial cds, clone: RAFL22-88-J06. | |||
GenBank | BT026455 | 1e-113 | BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-113 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013703110.1 | 8e-73 | scarecrow-like protein 21 isoform X1 | ||||
Refseq | XP_013703111.1 | 4e-73 | scarecrow-like protein 21 isoform X2 | ||||
Swissprot | Q9S7H5 | 2e-72 | SCL21_ARATH; Scarecrow-like protein 21 | ||||
TrEMBL | A0A078GR10 | 1e-109 | A0A078GR10_BRANA; BnaA07g04510D protein | ||||
STRING | Bra015156.1-P | 8e-73 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 8e-75 | SCARECROW-like 21 |
Publications ? help Back to Top | |||
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