PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038634001
Common NameGSBRNA2T00038634001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 445aa    MW: 48193.3 Da    PI: 4.8909
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038634001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3651e-111734442374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++++le+A+a+++g++e a+++Lar+s++ s+++++ ++l+ +++ AL++r++       ++ p++e      +e++ +++l++e+sP++
  GSBRNA2T00038634001  73 RQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINP----AESSAPATEL---YGKEHIISTQLLYELSPCF 155
                          6889*************************************************9....3333344444...49***************** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          k+++++aN aIl+a  ++    +  H+iDf+i++G+Q+++Ll+aL++R+ ++ p  +RiT+v +  s+   +l+++g+rL+++ ++lg++
  GSBRNA2T00038634001 156 KLGFMAANLAILDASGNNnddgTSFHVIDFEIGEGGQYVNLLHALSTRRsGKNPlVVRITAVTN-ISDGFSRLKTIGDRLSELSDRLGIS 244
                          ***************9998887889*********************9985444459********.557899******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          ++fnv++  rl+dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P vv++ve+e++ n+++Fl r++e++ +y 
  GSBRNA2T00038634001 245 LKFNVVAGLRLSDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSESCACYG 334
                          *****9888********************************************************************************* PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrvee 353
                          al+ds+e+++p+ +++r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ +    g++v+e
  GSBRNA2T00038634001 335 ALLDSVESTVPSSNSDRAKVEEG-IGRKLINAVACEGIDRVERCEVFGKWRMRMSMAGFELMPLSEKIAESIKSRLSNGNrvHPGFTVKE 423
                          ***********************.**************************************************9998777789****** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                          e+g +++gW++r+L ++SaWr
  GSBRNA2T00038634001 424 ENGGVCFGWMGRTLAVASAWR 444
                          ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.67146422IPR005202Transcription factor GRAS
PfamPF035143.6E-10973444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLNSLRELEK QLLDDDDAQG GDDDVSVITH SNSDWLHGLV TPNPNPVLSS SPTSSSSSSS  60
PSTASTTTSV CSRQTVLEIA TAIAEGKTEI ASEILARVSQ TPSQRRNSEE KLVDFMVTAL  120
RSRINPAESS APATELYGKE HIISTQLLYE LSPCFKLGFM AANLAILDAS GNNNDDGTSF  180
HVIDFEIGEG GQYVNLLHAL STRRSGKNPL VVRITAVTNI SDGFSRLKTI GDRLSELSDR  240
LGISLKFNVV AGLRLSDLSR ESLGCDPDEP LAVNLAFKLY RVPDESVCME NPRDELLRRV  300
KGLNPSVVTL VEEEMNSNTA PFLGRVSESC ACYGALLDSV ESTVPSSNSD RAKVEEGIGR  360
KLINAVACEG IDRVERCEVF GKWRMRMSMA GFELMPLSEK IAESIKSRLS NGNRVHPGFT  420
VKEENGGVCF GWMGRTLAVA SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-377144411375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038634001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612479.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A078GQW80.0A0A078GQW8_BRANA; BnaC09g28480D protein
STRINGBo9g083130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]