PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038440001
Common NameGSBRNA2T00038440001, LOC106446326
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 405aa    MW: 44472.5 Da    PI: 5.8178
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038440001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.43.2e-111433992374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAe v++++l++a+ lL+++se++sp g++ +R++ayf++AL+ar+ +  + l++a++  ++s+ +s++ +aal++f+ +sP++
  GSBRNA2T00038440001  43 LSLLLQCAEYVATDHLREASILLSEISETCSPFGSSPERVVAYFAQALQARVIS--TYLSSACSQLSESPLQSQKIFAALQTFNSLSPLI 130
                          689**************************************************9..555555555555555599999************* PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI +a++ge+ vHiiD+d++qGlQWp L++ LasRp++  s+RiTg+g+    s++ l +tg+rLa+fA++l +pfef+++
  GSBRNA2T00038440001 131 KFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPGLFHILASRPRKIRSIRITGFGP----SSDILASTGRRLADFAASLSLPFEFRPI 216
                          **********************************************************....9**************************9 PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalf 268
                          v k  +  ++++L  +pgEa++V+++   hrl+d ++s ++     L+++++l+P +v++veqe++++++    Fl rf+eal+yysalf
  GSBRNA2T00038440001 217 VGKIGNVTDPSRLGRRPGEAVVVHWMQ--HRLYDVTGSDHD----ALEIIRRLRPSLVTMVEQELSYDDGgggCFLGRFVEALHYYSALF 300
                          88888888******************9..****99999988....*******************9885443449**************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+l  +l++es er +vE+ +l+ ei+n+v  +g+        +++W+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l
  GSBRNA2T00038440001 301 DALGDGLGEESGERFTVEQIVLATEIRNIVGGKGRG-------MMRWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTL 383
                          ********************************9997.......999******************************************** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                           lgWkd +L+++SaW+
  GSBRNA2T00038440001 384 RLGWKDLSLLTASAWQ 399
                          ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.23316379IPR005202Transcription factor GRAS
PfamPF035141.1E-10843399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAAKRVHGDY PSSTIKRHKD LDFPEDTTTA LENDDGAAAI NLLSLLLQCA EYVATDHLRE  60
ASILLSEISE TCSPFGSSPE RVVAYFAQAL QARVISTYLS SACSQLSESP LQSQKIFAAL  120
QTFNSLSPLI KFSHFTANQA IFQALDGEDS VHIIDLDVMQ GLQWPGLFHI LASRPRKIRS  180
IRITGFGPSS DILASTGRRL ADFAASLSLP FEFRPIVGKI GNVTDPSRLG RRPGEAVVVH  240
WMQHRLYDVT GSDHDALEII RRLRPSLVTM VEQELSYDDG GGGCFLGRFV EALHYYSALF  300
DALGDGLGEE SGERFTVEQI VLATEIRNIV GGKGRGMMRW KEELSRVGFR PVSLRGNPAT  360
QAGLLLGMLP WNGYTLVEEN GTLRLGWKDL SLLTASAWQF QPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1394839824377Protein SCARECROW
5b3h_D1e-1394839824377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038440001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743481.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A078GM890.0A0A078GM89_BRANA; BnaUnng00200D protein
TrEMBLA0A3P6CZP40.0A0A3P6CZP4_BRACM; Uncharacterized protein
STRINGBo4g143710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]