PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037849001

Common Name

GSBRNA2T00037849001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7076.29 Da PI: 11.3909

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037849001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.3	4.8e-09	24	56	5	36
SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 5 nksnrqvtf.skRrngilKKAeELSvLCdaeva 36 n+++ + +f R ++ilKKA ELS+LCd +++ GSBRNA2T00037849001 24 NQTRFKKSFlLLREKTILKKALELSILCDNDIC 56 4444444441349*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.63E-7	17	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-5	36	56	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MNSLSSSASS STRMKNNNKL SVRNQTRFKK SFLLLREKTI LKKALELSIL CDNDICSSRV 60 RL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00037849001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148218.1	3e-29	PREDICTED: agamous-like MADS-box protein AGL53
TrEMBL	A0A078JE98	2e-33	A0A078JE98_BRANA; BnaC06g40920D protein
STRING	Bra018741.1-P	1e-28	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11759	7	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27090.2	3e-10	AGAMOUS-like 54

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]