PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037616001

Common Name

GSBRNA2T00037616001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 412aa MW: 47373.2 Da PI: 9.2931

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037616001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.5	2.7e-39	151	318	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 + ++drhski T +g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ + GSBRNA2T00037616001 151 PSRTDRHSKIKTVKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPKIIKIANSlsnkfnhgrfsscdesqprpalglmD 240 5799**********************************************************99999988888888766666666552 PP TCP 67 sssa....sec....eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +ss s++ + +s + ++++ k++ sq ++ +l+k+ rakar+ra++rt+ekm++++ GSBRNA2T00037616001 241 TSSDifelSSMwtveD------RGS----NtnmnetrgnkvDRRSVRGKRRMSQPRTPILKKLSKDARAKARERAKDRTKEKMMKRSA 318 2222333222232211......222....12233455666644444447777777777789********************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-39	152	315	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.237	153	211	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.607	295	312	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MNDNKTFSTT TTINEEYMLF PYNDHYSSQP LLPFSPCSSI NDILIHSNTS NNHLDHHHHQ 60 YLQAPASPFS HFESVPDFAL LASFLPQKNG HNDNQTITTN DHHHPPSFLP FNNPFGESHL 120 IEPSETKTTH IEDSQRISTS QDPNMKKVKK PSRTDRHSKI KTVKGTRDRR MRLSLDVARE 180 LFGLQDMLGF DKASKTVEWL LTQAKPKIIK IANSLSNKFN HGRFSSCDES QPRPALGLMD 240 TSSDIFELSS MWTVEDRGSN TNMNETRGNK VDRRSVRGKR RMSQPRTPIL KKLSKDARAK 300 ARERAKDRTK EKMMKRSAQV NVVVEEEVHN HHDEIVQKNN KSNVKATPCE ETIQEPLCKN 360 DRFAVCNEIV VDRKYHISDE FNPSFPMLDH HRSQWAASSI EFYRLSQIPI Y*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MNDNKTFSTT TTINEEYMLF PYNDHYSSQP LLPFSPCSSI NDILIHSNTS NNHLDHHHHQ  60
YLQAPASPFS HFESVPDFAL LASFLPQKNG HNDNQTITTN DHHHPPSFLP FNNPFGESHL  120
IEPSETKTTH IEDSQRISTS QDPNMKKVKK PSRTDRHSKI KTVKGTRDRR MRLSLDVARE  180
LFGLQDMLGF DKASKTVEWL LTQAKPKIIK IANSLSNKFN HGRFSSCDES QPRPALGLMD  240
TSSDIFELSS MWTVEDRGSN TNMNETRGNK VDRRSVRGKR RMSQPRTPIL KKLSKDARAK  300
ARERAKDRTK EKMMKRSAQV NVVVEEEVHN HHDEIVQKNN KSNVKATPCE ETIQEPLCKN  360
DRFAVCNEIV VDRKYHISDE FNPSFPMLDH HRSQWAASSI EFYRLSQIPI Y*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00037616001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680784.1	0.0	transcription factor TCP18-like
Swissprot	A1YKT1	0.0	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A078JD66	0.0	A0A078JD66_BRANA; BnaC05g51920D protein
STRING	Bo5g117410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	1e-170	TCP family protein

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]