PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037358001
Common NameGSBRNA2T00037358001, LOC106371220
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 320aa    MW: 34737.9 Da    PI: 8.5899
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037358001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18154208256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  GSBRNA2T00037358001 154 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 208
                          778899***********************************************98 PP
2HD-ZIP_I/II123.59.8e-40154243191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +
  GSBRNA2T00037358001 154 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLHKEVSELR-A 242
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00037358001 243 L 243
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-291116IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.5E-18133208IPR009057Homeodomain-like
SuperFamilySSF466892.14E-18141211IPR009057Homeodomain-like
PROSITE profilePS5007117.006150210IPR001356Homeobox domain
SMARTSM003893.0E-15152214IPR001356Homeobox domain
CDDcd000861.03E-14154211No hitNo description
PfamPF000469.4E-16154208IPR001356Homeobox domain
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
SMARTSM003401.5E-26210253IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-11210244IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSSFS HMHNHNNNHL QKKIYHNSWP  60
HQFQSSERNS DVGSLLRGLE VNRTPSATVV INLEEDAAGV SSPNSNVSSV SGNKRDLAAA  120
RGDGGGDENE AERASCSHGG GSDEEERGNC EGTRKKLRLS KEQALVLEET FKEHSTLNPK  180
QKLALAKQLN LRTRQVEVWF QNRRARTKLK QTEVDCEYLK RCCDTLTEEN RRLHKEVSEL  240
RALKLSPHLY MHMTPPTTLT MCPSCERVSA SSSSSAMAAA APPSSTASGG GRIPTVVGRP  300
SPQRPTPCAA ISLQSRLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158TRKKLRL
2202210RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037358001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935891e-131AB493589.1 Arabidopsis thaliana At2g44910 mRNA for hypothetical protein, partial cds, clone: RAAt2g44910.
GenBankAJ4412511e-131AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666714.10.0homeobox-leucine zipper protein ATHB-4
SwissprotP929531e-141ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A078GQC20.0A0A078GQC2_BRANA; BnaC04g50010D protein
STRINGBo4g195250.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.12e-83homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]