PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037328001
Common NameGSBRNA2T00037328001, LOC106392058
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 445aa    MW: 49872.9 Da    PI: 9.5347
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.6e-2497141145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+ep rCrRtDGKkWRCs++vl  +k+CErH+hrgr+rsrk +e+
  GSBRNA2T00037328001  97 DPEPTRCRRTDGKKWRCSNKVLLFQKYCERHMHRGRKRSRKLVES 141
                          79***************************************9986 PP
2WRC69.83.4e-22318362145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs++vl+g+k+C+rH+hrg+ ++++++e+
  GSBRNA2T00037328001 318 DNEPGRCRRTDGKKWRCSKNVLSGQKYCDRHMHRGSIKKKHPVET 362
                          68*********************************9999999886 PP
3QLQ43.11.3e-153266337
                  QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         + aaQlq++++Q+l+y+y+ a++ vP +L+++i++
  GSBRNA2T00037328001 32 MKAAQLQEFRMQALVYRYIEAGVRVPNHLVVPIWN 66
                         679*******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-73066IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.0043166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.3E-93465IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.31297141IPR014977WRC domain
PfamPF088794.7E-2098140IPR014977WRC domain
PROSITE profilePS5166721.972318363IPR014977WRC domain
PfamPF088793.2E-18320360IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEEEKHSLQS NKMQSPKTEE GDEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL  60
VVPIWNSLAL SSSSSSSYLI HHNYPSSSNA VLNDKVDPEP TRCRRTDGKK WRCSNKVLLF  120
QKYCERHMHR GRKRSRKLVE SSSSYDVASS SASTKRDNTD GLNSSTESRS VSHGAMSVSS  180
NAQVVTIASL PSARVCDNIP RPSLVVTEST NKIVRRRITD MSYDDFIKQR GATTCVRGFP  240
VQGSERLPSV QKFFPEASDN SSEAAKFSSN RKNEIIARSR EWKNMNVNCC GLFPGIHFSP  300
DTVLQDRGGF GLHRVETDNE PGRCRRTDGK KWRCSKNVLS GQKYCDRHMH RGSIKKKHPV  360
ETTPTHENAG IIRVAVRPDD RSVSCQDGDG QKLPVSVLGR EQLSRVSDEK NTTNSCSTDT  420
TITDIALKGE EDNEEVLSLC SSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130137GRKRSRKL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Detected in the shoot apical meristem (SAM) and in young leaf primordium. {ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:21036927}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037328001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688289.10.0growth-regulating factor 9 isoform X1
SwissprotQ8S9M31e-176GRF9_ARATH; Growth-regulating factor 9
TrEMBLA0A078GQA30.0A0A078GQA3_BRANA; BnaC04g50230D protein
STRINGBo4g195580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.11e-174growth-regulating factor 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]