PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037198001
Common NameGSBRNA2T00037198001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 620aa    MW: 69275 Da    PI: 6.6423
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037198001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.6e-22128228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++ +++a+e+       +++    ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  GSBRNA2T00037198001 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 215
                          99****************************964333..4459************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                             r+++el+v+v+r+
  GSBRNA2T00037198001 216 ---RQNEELRVGVRRH 228
                          ...577889****996 PP

2Auxin_resp113.51.9e-37253335183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aaha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k+svGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk
  GSBRNA2T00037198001 253 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKNQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 335
                          79*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-42118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-39125242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-18126227No hitNo description
PfamPF023621.4E-19128228IPR003340B3 DNA binding domain
SMARTSM010194.3E-19128229IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221128229IPR003340B3 DNA binding domain
PfamPF065071.0E-34253335IPR010525Auxin response factor
SuperFamilySSF542771.37E-11497577No hitNo description
PROSITE profilePS5174530.786500593IPR000270PB1 domain
PfamPF023096.4E-5501536IPR033389AUX/IAA domain
PfamPF023093.2E-6540590IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDPQLAARNH SSGKPGGALS DALVRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM  60
HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT LLPEADQSEP MSPDAPVEEP  120
EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI  240
SSHSMHIGVL ATAAHAITTG TIFSVFYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR  300
FEGEEAPEKR FSGTIVGVQE NKSSVWHDSE WRSLKVQWDE SSSVFRPERV SPWELEPIVA  360
NSMRSSHPPP QRNKRPRPPG LPSPTTAPST PVTADGLWKS PAVNPSSVPL FSPSANGGNK  420
SFGKQTNGNV CRLFGFELVE NVNVDECFSA ASVSGAVAVD QPVPSHEFDS GRQSEPLNVN  480
QSNIPSGSGD PEKSSPRPIR SCTKVHMQGS AVGRAVDLTR SECYEDLFRK LEEMFDIKGE  540
LLESTKKWQV VYTDDEDDMM MVGDDPWNEF CGMVRKIFIY TPEEVKKLSP KNKLTVNVRM  600
QSKTDAEENG NTEGRSSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053621359Auxin response factor 1
4ldw_A0.053621359Auxin response factor 1
4ldw_B0.053621359Auxin response factor 1
4ldx_A0.053621359Auxin response factor 1
4ldx_B0.053621359Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.66320.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037198001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794580.0JN979458.1 Brassica rapa subsp. pekinensis auxin response factor 1 (ARF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672529.10.0auxin response factor 1 isoform X1
RefseqXP_022572541.10.0auxin response factor 1 isoform X1
RefseqXP_022572542.10.0auxin response factor 1 isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A078GPN80.0A0A078GPN8_BRANA; Auxin response factor
STRINGBo4g083590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  3. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]