PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00037198001 | ||||||||
Common Name | GSBRNA2T00037198001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 620aa MW: 69275 Da PI: 6.6423 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.6e-22 | 128 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F GSBRNA2T00037198001 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 215 99****************************964333..4459************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 r+++el+v+v+r+ GSBRNA2T00037198001 216 ---RQNEELRVGVRRH 228 ...577889****996 PP | |||||||
2 | Auxin_resp | 113.5 | 1.9e-37 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k+svGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk GSBRNA2T00037198001 253 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKNQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 335 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.28E-42 | 118 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-39 | 125 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-18 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 1.4E-19 | 128 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-19 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.221 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-34 | 253 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.37E-11 | 497 | 577 | No hit | No description |
PROSITE profile | PS51745 | 30.786 | 500 | 593 | IPR000270 | PB1 domain |
Pfam | PF02309 | 6.4E-5 | 501 | 536 | IPR033389 | AUX/IAA domain |
Pfam | PF02309 | 3.2E-6 | 540 | 590 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 620 aa Download sequence Send to blast |
MDPQLAARNH SSGKPGGALS DALVRELWHA CAGPLVTLPR EGERVYYFPE GHMEQLEASM 60 HQGLEQQMPS FNLPSKILCK VINIQRRAES ETDEVYAQIT LLPEADQSEP MSPDAPVEEP 120 EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA TDLHNNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRQNEE LRVGVRRHMR QQTNIPSSVI 240 SSHSMHIGVL ATAAHAITTG TIFSVFYKPR TSRSEFIVSV NRYLEAKNQK LSVGMRFKMR 300 FEGEEAPEKR FSGTIVGVQE NKSSVWHDSE WRSLKVQWDE SSSVFRPERV SPWELEPIVA 360 NSMRSSHPPP QRNKRPRPPG LPSPTTAPST PVTADGLWKS PAVNPSSVPL FSPSANGGNK 420 SFGKQTNGNV CRLFGFELVE NVNVDECFSA ASVSGAVAVD QPVPSHEFDS GRQSEPLNVN 480 QSNIPSGSGD PEKSSPRPIR SCTKVHMQGS AVGRAVDLTR SECYEDLFRK LEEMFDIKGE 540 LLESTKKWQV VYTDDEDDMM MVGDDPWNEF CGMVRKIFIY TPEEVKKLSP KNKLTVNVRM 600 QSKTDAEENG NTEGRSSLF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 362 | 1 | 359 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 362 | 1 | 359 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 362 | 1 | 359 | Auxin response factor 1 |
4ldx_A | 0.0 | 5 | 362 | 1 | 359 | Auxin response factor 1 |
4ldx_B | 0.0 | 5 | 362 | 1 | 359 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 373 | 377 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.6632 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00037198001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN979458 | 0.0 | JN979458.1 Brassica rapa subsp. pekinensis auxin response factor 1 (ARF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013672529.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_022572541.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_022572542.1 | 0.0 | auxin response factor 1 isoform X2 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A078GPN8 | 0.0 | A0A078GPN8_BRANA; Auxin response factor | ||||
STRING | Bo4g083590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|