PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036925001 | ||||||||
Common Name | GSBRNA2T00036925001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 280aa MW: 29978.3 Da PI: 5.7473 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.8 | 6.5e-37 | 46 | 144 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++ + + ++s + GSBRNA2T00036925001 46 APKRPPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP-- 131 799*************************************************************9999955421..222222222222.. PP TCP 91 aksaakskksqks 103 + ++ ++ ++++ GSBRNA2T00036925001 132 QFESDGGSGKRRR 144 1222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.776 | 52 | 106 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.3E-29 | 52 | 128 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MESNLEGKVV HLSDPDPETN RGMLLKQEDD DPNKQQEVGF LQPVTAPKRP PSKDRHTKVE 60 GRGRRIRMPA GCAARIFQLT RELGHKSDGE TIRWLLERSE PAIIEATGTG TIPAIAVSVN 120 GALKIPTDST PQFESDGGSG KRRRRNCTSE FVDINRQDSS VTSGLAPITA SSYGVNLMNV 180 NAQSFVPFWQ TGFVTGGPNQ MGHMWAIPTV AAPSFLNGGG TRPVPSYVSN TSDAEPQMGT 240 SGGGGDEGTT QTLRDFSLET YDKKELQFLG GSGDNTSPS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15490 | 1e-110 | flower| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036925001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022557273.1 | 0.0 | transcription factor TCP19-like isoform X2 | ||||
Swissprot | Q9LT89 | 1e-126 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | A0A078GPG3 | 0.0 | A0A078GPG3_BRANA; BnaA02g11190D protein | ||||
STRING | Bra022568.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12583 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-121 | TCP family protein |
Publications ? help Back to Top | |||
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