PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036912001
Common NameGSBRNA2T00036912001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 187aa    MW: 19975.6 Da    PI: 10.9096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036912001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59e-1569117255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  GSBRNA2T00036912001  69 LFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPLPEMAAAAYDVAALALKG 117
                          689**875..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-1768125IPR016177DNA-binding domain
CDDcd000188.39E-1468125No hitNo description
PROSITE profilePS5103219.2369125IPR001471AP2/ERF domain
SMARTSM003804.5E-2669131IPR001471AP2/ERF domain
PfamPF008477.6E-969117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-2569125IPR001471AP2/ERF domain
PRINTSPR003677.9E-67081IPR001471AP2/ERF domain
PRINTSPR003677.9E-6107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSNGSNSPTT RTTSFRVASL ALPSKSSDQS PQSSPGSSSS PTPTRRPSLP AGGSPARRTA  60
TGLSGRHSLF RGIRLRNGKW VSEIREPRKT TRIWLGTYPL PEMAAAAYDV AALALKGPDA  120
VLNFPGLALT YVAPASNSAA DIRAAAGRAA EMKQPERVLE PGQSEKEEEE EAICLLRWSL  180
WTRKRC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.83171e-140flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036912001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127261.11e-119PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-62ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A078GPF61e-129A0A078GPF6_BRANA; BnaA02g11090D protein
STRINGBra022573.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-45ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]