PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036880001
Common NameGSBRNA2T00036880001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 577aa    MW: 62156.1 Da    PI: 5.5628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036880001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.79.5e-1072005762374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++++e+A av++g++e a +lLa +s + +++ ++ +Rl+ +++ AL+ r++    +  ++ +p +++e   +e+l +++l++e+sP++
  GSBRNA2T00036880001 200 RQTVMEIAAAVAEGKTETAAELLACVSPTPNQKTNSEERLVNFMVTALRLRINPAERR--ASPSPATATELYGKEHLISTQLLYELSPCF 287
                          6889*************************************************92222..2234444444459***************** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                          k+++++aN aIl+a+  +      +H++Df+i+ G+Q+++Ll+aL++R+   ++p  ++iT+v +   g +e+l+++g+rL+++ ++lgv
  GSBRNA2T00036880001 288 KLGFMAANLAILDAAGDNhdgeVLMHVVDFEIGGGGQYVNLLHALSTRRcgdDKPLVVKITAVTN--DGGEERLKAVGDRLSQLGDRLGV 375
                          **************98776643456***********************988445559********..66********************* PP

                 GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                          +++fnv+++ rl d++ e+L + p+E laVnl+++l+r++desv++e++rd++L+ vk+l+P+vv++veqe++ n+++Fl r++ea+ +y
  GSBRNA2T00036880001 376 SLRFNVVASLRLGDISRESLGCGPDEPLAVNLAFKLYRVPDESVCMENPRDALLRRVKGLEPRVVTLVEQEMNSNTAPFLGRVSEACACY 465
                          ******8888******************************************************************************** PP

                 GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                           al+ds+e+++++ + +r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +p+sek+a+++k+ l + +     ++v+
  GSBRNA2T00036880001 466 GALLDSVESSVASSNLDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPVSEKIAESMKSRLGNGNrvHSCFTVK 554
                          ************************.**************************************************99988764455**** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          e++g +++gW++r+L ++SaWr
  GSBRNA2T00036880001 555 EDDGGVCFGWMGRTLAVASAWR 576
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.236173554IPR005202Transcription factor GRAS
PfamPF035143.3E-104200576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVSGFPSGGG DGRSIPGGFG TVVNNNPQPT YRSQSPGIFL DQTGNRFSGG KRTLADFQAA  60
QQQQAAVNAF LLRSVKPRTY QNLHSPTIGL TSVNDMGLFG GSSQTQHQSD LFGIRMGYGS  120
SIEPVQNLNR VEESKNMLSS SLRELEKQLL EDDDESDAQG GGDDVSTITH SNSDWLHRVL  180
TPVLSSSPSS ASSPSTTCSR QTVMEIAAAV AEGKTETAAE LLACVSPTPN QKTNSEERLV  240
NFMVTALRLR INPAERRASP SPATATELYG KEHLISTQLL YELSPCFKLG FMAANLAILD  300
AAGDNHDGEV LMHVVDFEIG GGGQYVNLLH ALSTRRCGDD KPLVVKITAV TNDGGEERLK  360
AVGDRLSQLG DRLGVSLRFN VVASLRLGDI SRESLGCGPD EPLAVNLAFK LYRVPDESVC  420
MENPRDALLR RVKGLEPRVV TLVEQEMNSN TAPFLGRVSE ACACYGALLD SVESSVASSN  480
LDRAKVEEGI GRKLINAVAC EGIDRIERCE VFGKWRMRMS MAGFELMPVS EKIAESMKSR  540
LGNGNRVHSC FTVKEDDGGV CFGWMGRTLA VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-3518657674473Protein SHORT-ROOT
5b3h_B5e-3518857622419Protein SHORT-ROOT
5b3h_E5e-3518857622419Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127170.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036880001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687518.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A078GR260.0A0A078GR26_BRANA; BnaA02g10830D protein
STRINGBra022596.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]