PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036772001 | ||||||||
Common Name | GSBRNA2T00036772001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GeBP | ||||||||
Protein Properties | Length: 302aa MW: 34156.1 Da PI: 4.7673 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102.8 | 2.8e-32 | 34 | 128 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++r+w+e+De+++L+Gl++++ kt +ps d+d+f+ fv++si++++sk+ql++K+r+L++Kf +++++++g++p f++ d+++f++s GSBRNA2T00036772001 34 IKRIWNEDDELSILKGLVEYRVKTRHDPSFDWDGFFCFVQGSIHVRFSKEQLFSKVRKLRRKFVLHMERIDRGEDPLFTRLTDSQAFGYS 123 68**************************************************************************************** PP DUF573 93 kkiWg 97 ++iWg GSBRNA2T00036772001 124 NMIWG 128 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-26 | 35 | 128 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MATLKRLNFS DTCLQKSPSE EVSTKKKKLA SPVIKRIWNE DDELSILKGL VEYRVKTRHD 60 PSFDWDGFFC FVQGSIHVRF SKEQLFSKVR KLRRKFVLHM ERIDRGEDPL FTRLTDSQAF 120 GYSNMIWGLN QGEVAANGGG TEKAPGDTQE DEPLDNAGRV NDNGDESSKL DGKDSEFADG 180 GMENVMQIES DENASREKGR VSNDEPVNEN GAEKGELDGK ESHDDDDDEL RVVEDAFETT 240 ILQGLSDWQR NLQLKKLMMN LGTEKRKELS NEWKALCSEE VKLKIKKLRF TVKLVEAAND 300 G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21651 | 0.0 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia. Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots. {ECO:0000269|PubMed:18162594}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036772001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589882.1 | 0.0 | PREDICTED: uncharacterized protein LOC106298324 isoform X2 | ||||
Swissprot | Q8VYD2 | 4e-73 | STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | A0A078GNW2 | 0.0 | A0A078GNW2_BRANA; BnaC06g12070D protein | ||||
TrEMBL | A0A0D3CSS7 | 0.0 | A0A0D3CSS7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FT81 | 0.0 | A0A3P6FT81_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g057560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25650.1 | 3e-75 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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