PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00036606001 | ||||||||
Common Name | GSBRNA2T00036606001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LSD | ||||||||
Protein Properties | Length: 155aa MW: 16381.1 Da PI: 8.0792 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46 | 8.4e-15 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V GSBRNA2T00036606001 37 CSGCRNLLMYPVGATSVCCAVCNAV 61 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.3e-15 | 76 | 100 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV GSBRNA2T00036606001 76 CGGCHTLLMYIRGATSVQCSCCHTV 100 ************************9 PP | |||||||
3 | zf-LSD1 | 36.8 | 6.2e-12 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C ++ GSBRNA2T00036606001 114 CGSCKMLLMYQYGARSVKCAVCSFI 138 **********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.6E-14 | 34 | 64 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 7.67E-5 | 34 | 135 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.4E-11 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 9.8E-4 | 51 | 135 | No hit | No description |
TIGRFAMs | TIGR01053 | 9.6E-15 | 73 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 76 | 100 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.3E-11 | 111 | 140 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-11 | 114 | 138 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MLINEKSHFH ISFVLFSFFT MNLRFIGSTG GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA 60 VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGSCKML 120 LMYQYGARSV KCAVCSFITS VGGSTSTTDQ KLNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00036606001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB193295 | 0.0 | AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288950.1 | 1e-88 | protein LOL1 | ||||
Refseq | NP_849742.2 | 2e-88 | lsd one like 1 | ||||
Refseq | XP_009151438.1 | 1e-88 | PREDICTED: protein LOL1 isoform X2 | ||||
Refseq | XP_013742645.1 | 1e-88 | protein LOL1 isoform X2 | ||||
Swissprot | Q93ZB1 | 6e-84 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A078GP00 | 1e-108 | A0A078GP00_BRANA; BnaA05g18100D protein | ||||
STRING | AT1G32540.1 | 9e-88 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-77 | lsd one like 1 |
Publications ? help Back to Top | |||
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