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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSBRNA2T00036420001 | ||||||||
| Common Name | GSBRNA2T00036420001, LOC106443862 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | ARF | ||||||||
| Protein Properties | Length: 847aa MW: 93815.7 Da PI: 5.6357 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.2 | 1.9e-24 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F
GSBRNA2T00036420001 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI 243
99*********************999****996444444..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
++++ +l+v+v+r+
GSBRNA2T00036420001 244 --RDEKSQLMVGVRRA 257
..4577778*****97 PP
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| 2 | Auxin_resp | 108.4 | 7.6e-36 | 282 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aaha++++++F +++nPra+++eFv+++ k++ka+ +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+
GSBRNA2T00036420001 282 AAHATANRTPFLIFFNPRACPAEFVIPLPKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 365
79********************************9989********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.03E-45 | 146 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 3.3E-41 | 149 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.08E-23 | 155 | 256 | No hit | No description |
| Pfam | PF02362 | 4.2E-22 | 156 | 257 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.155 | 156 | 258 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.1E-25 | 156 | 258 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.4E-30 | 282 | 365 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 7.2E-9 | 735 | 826 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 23.145 | 740 | 824 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 5.59E-7 | 754 | 819 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 847 aa Download sequence Send to blast |
MGSLACGEDK MKTNGLVNGG TTTSTTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP 60 LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD 120 EIYAQMSLQP VHSERDVLPV PDLGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPPLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV 240 LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA 300 CPAEFVIPLP KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK 360 WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF AGENDWGSLI 420 KRPLPYATFP NMASEQLMKM MMRPHNNQNA VTSFMPEMQQ NVLMGHGGLL GDVKMQQPMV 480 MNQVVQVQPD NNNPSVSNTS GQEQNLSQSM NAPTNLENSS GRVNHGNEEL SEKPSALSPL 540 QADPSPEQIY PPQQSDPTNG FSFLETEEMT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP 600 DSTNSFQDMW DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD 660 FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT SSSNVDFDDT 720 SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKTAI ECMFGLEGLL 780 TRPKTSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE EGMKLLNSAC 840 INDLKT* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 390 | 2 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00036420001 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JN979466 | 0.0 | JN979466.1 Brassica rapa subsp. pekinensis auxin response factor 5-2 (ARF5-2) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009110255.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
| Refseq | XP_013740901.1 | 0.0 | auxin response factor 5 | ||||
| Refseq | XP_022553021.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A078JAP5 | 0.0 | A0A078JAP5_BRANA; Auxin response factor | ||||
| STRING | Bra016492.1-P | 0.0 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5808 | 27 | 46 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 106443862 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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