PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036362001
Common NameGSBRNA2T00036362001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 649aa    MW: 71451.9 Da    PI: 7.0584
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036362001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094564931954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00036362001 456 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 493
                          665569******************************88 PP
2BELL123.67.7e-40314385172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  GSBRNA2T00036362001 314 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 385
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.6E-82238383IPR006563POX domain
PfamPF075261.0E-51244382IPR006563POX domain
PROSITE profilePS5007112.86434497IPR001356Homeobox domain
CDDcd000861.80E-12437498No hitNo description
SMARTSM003891.1E-9437501IPR001356Homeobox domain
SuperFamilySSF466891.33E-17438504IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28440503IPR009057Homeodomain-like
PfamPF059202.9E-18454493IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGLATTTVPH HHHKKTLDNS LDSMSQDYHH HQGIFSFSSG FHRPSSSHQE EVEESAVSGA  60
QIPVYETAGM LSEMFSYPGG GNGGSGEIPD HSTKQLLEQQ NRHNNNNSTL HMLLPNHHHH  120
QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS  180
IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG  240
IYTLRNSKYT KPAQELLEEF CSVGRGHNFK KNKLSRNNSN PNTSGCGGGG GGGGGGSSSS  300
AGAANDNPPL SPADRIEHQR RKVKLLSMLE EVDRRYNHYC EQMQMVVNSF DQVMGYGAAV  360
PYTTLAQKAM SRHFRCLKDA VAVQLKRSCE LLGDKESAGA ASSGLTKGET PRLRLLEQSL  420
RQQRAFHHMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL NPYPSDADKH LLARQTGLSR  480
NQVSNWFINA RVRLWKPMVE EMYQQEAKER EEEELGENKK EDYQHQRRHQ QTNNKDTKPN  540
ESNFTLVQTI TAQTPTTTMM TSTPHENDPS FLPPSTSVAT APSLGVSGAF TVSTCQQDVS  600
DFHVEDGVIR FGTKQAGDVS LTLGLRHTGN MPDNNKNPSF SVRDFGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-16443501563Homeobox protein Meis2
4xrm_B8e-16443501563Homeobox protein Meis2
4xrs_A6e-16443500158Homeobox protein Meis1
4xrs_B6e-16443500158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283296SGCGGGGGGGGGGS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036362001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528110.0AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636558.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_022571116.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A078JCR10.0A0A078JCR1_BRANA; BnaC04g56300D protein
TrEMBLA0A0D3C1J60.0A0A0D3C1J6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CR340.0A0A3P6CR34_BRAOL; Uncharacterized protein
STRINGBo4g151860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]