PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00036084001
Common NameGSBRNA2T00036084001, LOC106407657
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 192aa    MW: 20965.1 Da    PI: 7.7288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00036084001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182877255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  GSBRNA2T00036084001 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 77
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132885IPR001471AP2/ERF domain
SMARTSM003809.1E-392891IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-212986IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-302986IPR001471AP2/ERF domain
PfamPF008473.9E-122977IPR001471AP2/ERF domain
PRINTSPR003675.2E-92940IPR001471AP2/ERF domain
CDDcd000184.45E-272987No hitNo description
PRINTSPR003675.2E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
METAMEGAAA VPTSTVAAAA AARKREKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVFYLRGPSA RLNFPELLAG VTVAGGNGGG DMSAAYIRRK AAEVGAQVDA  120
LEAAGGNRHH HHQQYQRGNH DYVDDDHSVN HSNYRLNDGQ HECSSKDKRC NGSWEAVDLN  180
KLPDPETSDD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152785463ATERF1
3gcc_A2e-152785463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.164160.0bud| microspore-derived embryo
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00036084001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325120.0AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703983.11e-141ethylene-responsive transcription factor RAP2-10
SwissprotQ9SW632e-86RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A078J6T41e-140A0A078J6T4_BRANA; BnaCnng39660D protein
STRINGBo7g118430.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-82related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]