PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035884001 | ||||||||
Common Name | GSBRNA2T00035884001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 264aa MW: 29462.9 Da PI: 11.0505 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.6 | 1.1e-12 | 198 | 247 | 7 | 58 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r++kNRe+A rsR+RK+++ eLe kv+ L+aeN +Lk + ++lk +a+ GSBRNA2T00035884001 198 HKRMIKNRESAARSRARKQEY--ELELKVAHLKAENARLKRQQDQLKMAAAN 247 79******************9..8999*******************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.2E-5 | 188 | 254 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.0E-10 | 196 | 244 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.51E-21 | 196 | 248 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-10 | 197 | 245 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-8 | 197 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 199 | 214 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MLSSAKHQRK HRVSAPNKNK ILNKVPSISS SSSPSHSQVQ KRSLITMEEV WKDINLASIH 60 HLNHHSQHPQ HNHEPRFRSH NHQNQNPNSI FQDFLNRPLN LEPTIPTSLS GDATTGTALF 120 GSSPLAPPAT VLSLNSSACF EFLDNQDPLV TSNSNLHSHN HLTNVRSAGT PFEALVTSTC 180 FGKKRGQESN EGSGNRHHKR MIKNRESAAR SRARKQEYEL ELKVAHLKAE NARLKRQQDQ 240 LKMAAANQQP KKNTLQRSSS ALF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035884001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624815.1 | 1e-166 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-129 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A078J6E7 | 0.0 | A0A078J6E7_BRANA; BnaC03g76870D protein | ||||
STRING | Bo3g156810.1 | 1e-137 | (Brassica oleracea) | ||||
STRING | Al_scaffold_0007_453 | 1e-136 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-106 | bZIP family protein |