PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035840001

Common Name

GSBRNA2T00035840001, LOC106349371

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 823aa MW: 91558.7 Da PI: 5.8605

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035840001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	547	597	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GSBRNA2T00035840001 547 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 597 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	536	617	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	549	597	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.64E-20	717	807	No hit	No description
PROSITE profile	PS51745	19.789	718	804	IPR000270	PB1 domain
SMART	SM00666	2.0E-23	718	804	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.0E-25	719	804	No hit	No description
Pfam	PF00564	1.2E-17	719	803	IPR000270	PB1 domain
CDD	cd06407	7.81E-33	719	803	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MELDDLDLGS SWPLDQISFA SSSFRFPSSD QPFSPLWSFS SADGGAELCS APTLLTDYSL 60 LLASSESETA ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA 120 QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF 180 RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN 240 YAPEVEKVCK ALEAVNLKTS EILNHESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT 300 WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ 360 KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL 420 EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEEGMVYS 480 KREPIQISIS KDYLEINAPE EKLRLNPDLV VENNDVANGF ERFRTFNPSA EEAKTEKKTE 540 RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS 600 LTRLKHVIDS VQGADGSINL TSLSPRPWQV SQPPPPPTTG SPTNYIKLEN RDAEDSAGSS 660 TSRASCKVSP ISETRFRLLT QNQEAFKQTA FDESDSTSKN IANFWTSQDT TTLLLFKLVS 720 IKATYREDII RFKISPESIS IAELKEQVAK RLKLETGAFE LKYLDDDKEW VSVSCDADLS 780 ECLDTSSVVT AAKANTLRLS VHDVTPNFGS SCESSEETMM CL*

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MELDDLDLGS SWPLDQISFA SSSFRFPSSD QPFSPLWSFS SADGGAELCS APTLLTDYSL  60
LLASSESETA ATKDNHLLPS PSWGVQMPLE NPDTYCAIKA KMTQALRFFK ESTGQQHLLA  120
QVWAPVKNRN GRYLLTTSGQ PFFLGPNSNG LNQYRMVSLT YMFSLDSERD GELGLPGRVF  180
RKKLPEWTPN VQYYSSKEFS RLGHALNYNV QGTLALPVFE PSRQLCVGVV ELIMTSPKIN  240
YAPEVEKVCK ALEAVNLKTS EILNHESTQI CNEGRQNALA EILEILTVVC ETYKLPLAQT  300
WVPCRHRSVL AFGGGFKKSC SSFDGSCMGK VCMSTSDLAV YVVDAHVWGF RDACAEHHLQ  360
KGQGVAGRAF LSGNLCFSRD VTRFCKTDYP LVHYARMFKL TSCFAVCLKS TYTGDDEYVL  420
EFFLPPGVTD EGEQDSLLGS LFQTMKQHYS SLKVVSGTEL FENEMSIEVV EASEEGMVYS  480
KREPIQISIS KDYLEINAPE EKLRLNPDLV VENNDVANGF ERFRTFNPSA EEAKTEKKTE  540
RKRGKTEKTI SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS  600
LTRLKHVIDS VQGADGSINL TSLSPRPWQV SQPPPPPTTG SPTNYIKLEN RDAEDSAGSS  660
TSRASCKVSP ISETRFRLLT QNQEAFKQTA FDESDSTSKN IANFWTSQDT TTLLLFKLVS  720
IKATYREDII RFKISPESIS IAELKEQVAK RLKLETGAFE LKYLDDDKEW VSVSCDADLS  780
ECLDTSSVVT AAKANTLRLS VHDVTPNFGS SCESSEETMM CL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035840001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013612987.1	0.0	PREDICTED: protein NLP6
Refseq	XP_013644779.1	0.0	protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A078J6C8	0.0	A0A078J6C8_BRANA; BnaCnng38990D protein
TrEMBL	A0A0D3E483	0.0	A0A0D3E483_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DZK5	0.0	A0A3P6DZK5_BRAOL; Uncharacterized protein
STRING	Bo9g032270.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	106349371

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]