PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035672001 | ||||||||
Common Name | GSBRNA2T00035672001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 159aa MW: 18096.7 Da PI: 9.5271 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ + + +G g W+t +++ g++R++k+c++rw +yl GSBRNA2T00035672001 15 KGAWTPEEDQKLISYLNNHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.7e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E++ ++ +++++G++ W+ Iar ++ gRt++++k++w+++ GSBRNA2T00035672001 68 RGEFTEDEELSIISLHALHGNK-WSDIARGLP-GRTDNEIKNYWNTH 112 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.817 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.368 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVRTPCCKPE LGLKKGAWTP EEDQKLISYL NNHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEELSII SLHALHGNKW SDIARGLPGR TDNEIKNYWN THIKKRLIKK 120 GVDPVTHKSL ISETSKSENL PEILNNQNII QTIITINE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035672001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670119 | 1e-166 | KJ670119.1 Brassica napus MYB transcription factor 51 (MYB51.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149330.1 | 1e-112 | PREDICTED: transcription factor MYB51 | ||||
Refseq | XP_013723281.1 | 1e-112 | transcription factor MYB51-like | ||||
Swissprot | O49782 | 4e-94 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | A0A078GQ19 | 1e-112 | A0A078GQ19_BRANA; BnaA06g12690D protein | ||||
TrEMBL | M4EA59 | 1e-110 | M4EA59_BRARP; Uncharacterized protein | ||||
STRING | Bra025666.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 9e-96 | myb domain protein 51 |