PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035644001 | ||||||||
Common Name | GSBRNA2T00035644001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29555.1 Da PI: 5.266 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++lv +++++G +W++ +++ g+ R +k+c++rw++yl GSBRNA2T00035644001 14 KGEWTAEEDQKLVAYINEHGLCDWRSLPERAGLQRGGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e ++++++ lG++ W++Ia++m +Rt++++k++w++ GSBRNA2T00035644001 67 RGKFTPQEEEAIIKLHAVLGNR-WAAIAKKME-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.997 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.885 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRKTWFDDD GMKKGEWTAE EDQKLVAYIN EHGLCDWRSL PERAGLQRGG KSCRLRWLNY 60 LRPGIRRGKF TPQEEEAIIK LHAVLGNRWA AIAKKMENRT DNDIKNHWNS CLKKRLSKNG 120 IDPMTHEPII NNLTVTTTNE EECGSSPTNT SLTTESHFSS SPSGSACLLN KLAAGIASRQ 180 HDLDRIKNIL LDRKITINDQ DEEGGLRRDQ KIGEEDDFLI WDDGEVRRYM DTDPMEYETT 240 PYDSVLYEST QILDYLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035644001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974753 | 0.0 | KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149358.1 | 0.0 | PREDICTED: myb-related protein Zm38-like | ||||
Swissprot | Q9LE63 | 7e-58 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A078GN14 | 0.0 | A0A078GN14_BRANA; BnaA06g12860D protein | ||||
TrEMBL | A0A397YWZ9 | 0.0 | A0A397YWZ9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EA71 | 0.0 | M4EA71_BRARP; Uncharacterized protein | ||||
STRING | Bra025678.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-113 | myb domain protein 47 |
Publications ? help Back to Top | |||
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