PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035644001
Common NameGSBRNA2T00035644001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 29555.1 Da    PI: 5.266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035644001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++lv +++++G  +W++ +++ g+ R +k+c++rw++yl
  GSBRNA2T00035644001 14 KGEWTAEEDQKLVAYINEHGLCDWRSLPERAGLQRGGKSCRLRWLNYL 61
                         799*******************************************97 PP

2Myb_DNA-binding57.33.5e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+e ++++++ lG++ W++Ia++m  +Rt++++k++w++ 
  GSBRNA2T00035644001  67 RGKFTPQEEEAIIKLHAVLGNR-WAAIAKKME-NRTDNDIKNHWNSC 111
                          89********************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.997961IPR017930Myb domain
SuperFamilySSF466897.49E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221568IPR009057Homeodomain-like
CDDcd001671.31E-91661No hitNo description
PROSITE profilePS5129426.88562116IPR017930Myb domain
SMARTSM007173.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
CDDcd001671.08E-1069109No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRKTWFDDD GMKKGEWTAE EDQKLVAYIN EHGLCDWRSL PERAGLQRGG KSCRLRWLNY  60
LRPGIRRGKF TPQEEEAIIK LHAVLGNRWA AIAKKMENRT DNDIKNHWNS CLKKRLSKNG  120
IDPMTHEPII NNLTVTTTNE EECGSSPTNT SLTTESHFSS SPSGSACLLN KLAAGIASRQ  180
HDLDRIKNIL LDRKITINDQ DEEGGLRRDQ KIGEEDDFLI WDDGEVRRYM DTDPMEYETT  240
PYDSVLYEST QILDYLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035644001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747530.0KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149358.10.0PREDICTED: myb-related protein Zm38-like
SwissprotQ9LE637e-58MY106_ARATH; Transcription factor MYB106
TrEMBLA0A078GN140.0A0A078GN14_BRANA; BnaA06g12860D protein
TrEMBLA0A397YWZ90.0A0A397YWZ9_BRACM; Uncharacterized protein
TrEMBLM4EA710.0M4EA71_BRARP; Uncharacterized protein
STRINGBra025678.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-113myb domain protein 47
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]