PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035641001
Common NameGSBRNA2T00035641001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 30119.4 Da    PI: 4.8576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035641001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                         rg WT eEd++lv +++++G g+W+  +r+ g + R++k+c++rw++yl
  GSBRNA2T00035641001 14 RGGWTDEEDQKLVAYINEYGIGDWRFLPRKAGsLQRCGKSCRLRWLNYL 62
                         789********************************************97 PP
2Myb_DNA-binding54.33e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T+eE+e +++    lG++ W++Ia+ m+ gR+++++k++w++ 
  GSBRNA2T00035641001  68 KGKFTPEEEEAIINFQSVLGNR-WAAIAQQMP-GRSDNDIKNHWNSC 112
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.236962IPR017930Myb domain
SuperFamilySSF466891.2E-2812109IPR009057Homeodomain-like
SMARTSM007171.3E-121364IPR001005SANT/Myb domain
PfamPF002491.5E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-231669IPR009057Homeodomain-like
CDDcd001678.43E-111762No hitNo description
PROSITE profilePS5129425.75663117IPR017930Myb domain
SMARTSM007172.2E-1567115IPR001005SANT/Myb domain
PfamPF002492.1E-1568112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2570117IPR009057Homeodomain-like
CDDcd001678.79E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRATWFDAD GTKRGGWTDE EDQKLVAYIN EYGIGDWRFL PRKAGSLQRC GKSCRLRWLN  60
YLRPGVKKGK FTPEEEEAII NFQSVLGNRW AAIAQQMPGR SDNDIKNHWN SCLKKRLERN  120
GIDQMTHQPI INLAVKTPSF NIDCGNSSSS MVSPSPSFSS SGSASLLNRL ATGISSREHG  180
VDRIKNILSD PRTPIITTQE EEFEEPNKDH GKALAGDDQE DDFLMWDEEN MRHFMDEIGQ  240
MDFETNGVYN PSSSSPYGVY ETGLLDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141187109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035641001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149359.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_013641843.10.0transcription factor MYB41-like
TrEMBLA0A078GJM00.0A0A078GJM0_BRANA; BnaA06g12870D protein
TrEMBLA0A3P5YS960.0A0A3P5YS96_BRACM; Uncharacterized protein
STRINGBo5g025790.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.16e-86myb domain protein 47
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]