PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035313001
Common NameGSBRNA2T00035313001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 427aa    MW: 47209.6 Da    PI: 4.4429
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035313001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.33.6e-24331381252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl
  GSBRNA2T00035313001 331 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 381
                          56899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.53312401IPR003035RWP-RK domain
PfamPF020421.0E-20334381IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAGDDDPKPP GPEDKDDGDP YYEPFSEEEL QNLMSSQNPN LMDFAFTENT VPPPTPTPIT  60
IATSDIIETE MLNQLSLTIP NCEDTDDFLV TYFDDDIDLS WDLSDIPSEF LSDNMDSNII  120
GEIGTNQDNG NIVGGTGALE VSTRVFVENG PNVEAGGGSS APITPTVSIG ILMCTCCNLL  180
RTLIHSNGQE MMRLDFHGGI GYFCHAILEI HRLDGSTEPQ YQTIDLKFLS MEDVKRFIED  240
YLAARAACGF GVVEDINADF YQAMNANFSN NQPPMLALPP VDDVPMPQAI VPDPALNVPS  300
VPLYVGLRDE PPVSKGKKRK QTPLAIQRER TGKLKLKDIS MHFHLPIQEA ARRMSLCPTV  360
VKKICRRGGL YRWPHRKIKS LLRKISSLKS SLETTKDAQA KARVESEIER LEKQISEICS  420
EALKYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035313001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022570906.10.0uncharacterized protein LOC106369845
TrEMBLA0A078GMR90.0A0A078GMR9_BRANA; BnaC09g41710D protein
STRINGBo9g163480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-08RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]