PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00035313001 | ||||||||
Common Name | GSBRNA2T00035313001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 427aa MW: 47209.6 Da PI: 4.4429 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.3 | 3.6e-24 | 331 | 381 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl GSBRNA2T00035313001 331 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 381 56899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.53 | 312 | 401 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-20 | 334 | 381 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAGDDDPKPP GPEDKDDGDP YYEPFSEEEL QNLMSSQNPN LMDFAFTENT VPPPTPTPIT 60 IATSDIIETE MLNQLSLTIP NCEDTDDFLV TYFDDDIDLS WDLSDIPSEF LSDNMDSNII 120 GEIGTNQDNG NIVGGTGALE VSTRVFVENG PNVEAGGGSS APITPTVSIG ILMCTCCNLL 180 RTLIHSNGQE MMRLDFHGGI GYFCHAILEI HRLDGSTEPQ YQTIDLKFLS MEDVKRFIED 240 YLAARAACGF GVVEDINADF YQAMNANFSN NQPPMLALPP VDDVPMPQAI VPDPALNVPS 300 VPLYVGLRDE PPVSKGKKRK QTPLAIQRER TGKLKLKDIS MHFHLPIQEA ARRMSLCPTV 360 VKKICRRGGL YRWPHRKIKS LLRKISSLKS SLETTKDAQA KARVESEIER LEKQISEICS 420 EALKYA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00035313001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022570906.1 | 0.0 | uncharacterized protein LOC106369845 | ||||
TrEMBL | A0A078GMR9 | 0.0 | A0A078GMR9_BRANA; BnaC09g41710D protein | ||||
STRING | Bo9g163480.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-08 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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