PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035196001

Common Name

GSBRNA2T00035196001, LOC106424645

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 322aa MW: 36457.9 Da PI: 7.7576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035196001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g++R++k+c++rw +yl GSBRNA2T00035196001 14 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.9	3.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l GSBRNA2T00035196001 67 RGKFNLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 899*****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-25	6	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.705	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.1E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.25	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-25	64	117	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGRSPYCDKL GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGLHRCG KSCRLRWTNY 60 LRPDIKRGKF NLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLVKMG 120 IDPVTHKPKN ETPLGLSKNA ATLSHMAQWE SARLEAEARF ARESKLLHYQ TKPSSHHHHG 180 FTHKTLLTTW TTKTNQDQQQ LESPTSTVSF SDMKEPSNRV SAKMEFTGSS TGLALMKEHE 240 NDWISTTIFE ATQMEEGVEE GFTGLLLGGD TLGRSFSADK NERDGENSGG ECNNYFEDNK 300 NYLDSIFNFV GPSPSDAPPM F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	12	116	5	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14847	1e-178	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269\|PubMed:23709630}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035196001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353346	0.0	AK353346.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-F01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013720859.1	0.0	transcription factor MYB16
Swissprot	Q9LXF1	0.0	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A078GM54	0.0	A0A078GM54_BRANA; BnaC09g42570D protein
TrEMBL	A0A3P6EIE5	0.0	A0A3P6EIE5_BRAOL; Uncharacterized protein
STRING	Bo9g164230.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-166	myb domain protein 16

Link Out ? help Back to Top
Entrez Gene	106424645

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]