PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00033925001 | ||||||||
Common Name | GSBRNA2T00033925001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 324aa MW: 35438.6 Da PI: 6.4822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.8e-19 | 19 | 67 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g GSBRNA2T00033925001 19 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.84E-30 | 17 | 74 | No hit | No description |
SMART | SM00380 | 7.1E-34 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-28 | 19 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 19 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-8 | 19 | 30 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 21 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 41 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF14368 | 7.8E-15 | 187 | 280 | IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain |
SuperFamily | SSF47699 | 2.49E-13 | 206 | 282 | IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain |
Gene3D | G3DSA:1.10.110.10 | 1.7E-12 | 207 | 280 | No hit | No description |
CDD | cd00010 | 4.86E-17 | 210 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MNTTSSKSKK KQEEGGARFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR 60 AARSMRGTRA RTNFVYSDMP PSSSVTSIIS PDDPPPPPPP AADAPPCSND PVDYMMMFNQ 120 YSSTDSPMLQ PYSDQVDSSY MFGGSSSCYS NSSSELPPLP SDLSNSCYSQ PQWSVDDYST 180 ATYFEVALLV VANFGMMQTR GQSVSCLNQL APCLNYLNGT KEVPQVCCNP LKSVIKNNPE 240 CLCRMISNRG SSRAEQAGID VNNAQMLPAR CGEHVNPIAC LTRSRGSTNS DRSSSTGNSF 300 SQSYWMTTLA FSATLLSFIL QIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 16 | 74 | 3 | 62 | ATERF1 |
3gcc_A | 2e-20 | 16 | 74 | 3 | 62 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00033925001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121715.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor LEP | ||||
Swissprot | Q9M644 | 2e-88 | LEP_ARATH; Ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A078K3X4 | 0.0 | A0A078K3X4_BRANA; BnaCnng78540D protein | ||||
STRING | Bra008793.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 7e-59 | ERF family protein |
Publications ? help Back to Top | |||
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