PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033925001
Common NameGSBRNA2T00033925001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 324aa    MW: 35438.6 Da    PI: 6.4822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033925001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-191967355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  GSBRNA2T00033925001 19 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                         67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-301774No hitNo description
SMARTSM003807.1E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-281975IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-211976IPR016177DNA-binding domain
PRINTSPR003674.5E-81930IPR001471AP2/ERF domain
PfamPF008471.0E-112167IPR001471AP2/ERF domain
PRINTSPR003674.5E-84157IPR001471AP2/ERF domain
PfamPF143687.8E-15187280IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SuperFamilySSF476992.49E-13206282IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.101.7E-12207280No hitNo description
CDDcd000104.86E-17210272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNTTSSKSKK KQEEGGARFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP PSSSVTSIIS PDDPPPPPPP AADAPPCSND PVDYMMMFNQ  120
YSSTDSPMLQ PYSDQVDSSY MFGGSSSCYS NSSSELPPLP SDLSNSCYSQ PQWSVDDYST  180
ATYFEVALLV VANFGMMQTR GQSVSCLNQL APCLNYLNGT KEVPQVCCNP LKSVIKNNPE  240
CLCRMISNRG SSRAEQAGID VNNAQMLPAR CGEHVNPIAC LTRSRGSTNS DRSSSTGNSF  300
SQSYWMTTLA FSATLLSFIL QIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201674362ATERF1
3gcc_A2e-201674362ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033925001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121715.11e-131PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6442e-88LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A078K3X40.0A0A078K3X4_BRANA; BnaCnng78540D protein
STRINGBra008793.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-59ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]