PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033502001
Common NameGSBRNA2T00033502001, LOC106416616
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 297aa    MW: 33661.8 Da    PI: 5.0513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033502001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21151201255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00033502001 151 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDTAIEAARAYDQAAFRLRG 201
                          8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.10E-32150209No hitNo description
Gene3DG3DSA:3.30.730.104.1E-33150210IPR001471AP2/ERF domain
SMARTSM003802.7E-37151215IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23151211IPR016177DNA-binding domain
PROSITE profilePS5103224.355151209IPR001471AP2/ERF domain
PfamPF008477.5E-15151201IPR001471AP2/ERF domain
PRINTSPR003671.1E-10152163IPR001471AP2/ERF domain
PRINTSPR003671.1E-10175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MANPSEASAL RFIEKHLLDE LSPVATDRWM IHESAATESS SDSSPTIFGS PAAPIEFSEF  60
ENKPEIIDLS TPRFVDLISS PFEFDSEVSL SDFDFKPSYQ TGNQFEPEIK TQSNRKPPLK  120
ISVPTKTEWI QFDPQPEVTK PKQAIAEEKK HYRGVRQRPW GKFAAEIRDP NKRGSRIWLG  180
TFDTAIEAAR AYDQAAFRLR GSKAILNFPL EVGKWKTRSN ADGEKKRKRH DELEDVTVVE  240
KVLKTEQNVN GKETFPFVES DLTELYDWDL TGFLNFPLLS PLSPRPSFSY SELTVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-30150212163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-30150212466ATERF1
3gcc_A3e-30150212466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.248680.0root
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033502001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609112.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_013712994.10.0ethylene-responsive transcription factor 5
SwissprotO803411e-143EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A078GLD80.0A0A078GLD8_BRANA; BnaC09g20100D protein
TrEMBLA0A0D3E7740.0A0A0D3E774_BRAOL; Uncharacterized protein
STRINGBo9g069410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-129ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]