PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033492001
Common NameGSBRNA2T00033492001, LOC106416584
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28166.8 Da    PI: 8.7415
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033492001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.2e-1799153256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Lee F+++++++ +++  L+kkl++t rqV vWFqNrRa+ k
  GSBRNA2T00033492001  99 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALSKKLSMTARQVEVWFQNRRARTK 153
                          788899***********************************************98 PP
2HD-ZIP_I/II116.12e-3799188191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LEe+F+e+++L+p++K +l+++L +++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL ke  eLr +
  GSBRNA2T00033492001  99 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALSKKLSMTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLLKEAMELR-T 187
                          69*************************************************************************************9.4 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00033492001 188 L 188
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.7E-17285IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.8E-1774156IPR009057Homeodomain-like
SuperFamilySSF466892.1E-1790156IPR009057Homeodomain-like
PROSITE profilePS5007116.50395155IPR001356Homeobox domain
SMARTSM003891.4E-1497159IPR001356Homeobox domain
PfamPF000468.6E-1599153IPR001356Homeobox domain
CDDcd000861.96E-1499156No hitNo description
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PfamPF021839.1E-8155188IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-22155198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMMGKEDLGL SLSLGFSQHN NPSSSISNNL YRFPWNQTLA STSDLRKIQV NTLPSTVDCE  60
EEAGVSSPNS TISSTISGGK RSEREGTDEE EDAGGETSRK KLRLSKDQSA FLEETFKEHN  120
TLNPKQKLAL SKKLSMTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK LTEENRRLLK  180
EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVAGPSSNH HQTHRPVAIN PWVPRAGQVA  240
HGLDFEALRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103SRKKLRL
2147155RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.214981e-114flower| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033492001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834931e-166AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609037.10.0PREDICTED: homeobox-leucine zipper protein HAT2-like
RefseqXP_013712965.10.0homeobox-leucine zipper protein HAT2
SwissprotP466011e-151HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A078GKS60.0A0A078GKS6_BRANA; BnaC09g20160D protein
TrEMBLA0A0D3E7820.0A0A0D3E782_BRAOL; Uncharacterized protein
STRINGBo9g069490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-132Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]