PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032675001
Common NameGSBRNA2T00032675001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 305aa    MW: 34906 Da    PI: 9.3859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1719113198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffkvl ++d +++ +  +p +f+++++ k e s++++++ ++g sW++ l  +k+++   y+ ++GW +F ++ngL + + ++F+++g++
  GSBRNA2T00032675001  19 FFKVLRKEDLSSQTMREIPQDFLKSISAK-EFSFKMVFKLPWGSSWRIDL--SKYQSFfyYMEQNGWDQFLSDNGLGDDELLTFTHKGNM 105
                          99*********************999755.799*****************..999888889999************************** PP

                          EE..EEEEE- CS
                   B3  89 efelvvkvfr 98 
                          +f  +v++++
  GSBRNA2T00032675001 106 CF--NVSIYK 113
                          **..887765 PP
2B352.11.2e-16218295487
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          + ++s+vl +g   +pk+fae h+ k  e++  ++ d++g +sWev++ ++k ++   +++GW + vk+ gL++gD+++F+l++ 
  GSBRNA2T00032675001 218 TIKKSYVLFLG---VPKRFAEMHMPK--EETVFKIHDTKGkKSWEVTYVVSKIQS--RFSRGWPGLVKDFGLEVGDVCTFELIKP 295
                          55667777665...9******99855..44589999988889******5555555..599*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-1913116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1814119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-1717113No hitNo description
PfamPF023629.0E-1519112IPR003340B3 DNA binding domain
SMARTSM010192.0E-1919115IPR003340B3 DNA binding domain
PROSITE profilePS5086312.84419115IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746212304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18213302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19213302IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-16215296No hitNo description
SMARTSM010192.0E-16215303IPR003340B3 DNA binding domain
PfamPF023621.8E-13218297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MATNNYIAKL MEESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVFKLPWG  60
SSWRIDLSKY QSFFYYMEQN GWDQFLSDNG LGDDELLTFT HKGNMCFNVS IYKTDCVEIL  120
RPKRSATIAS SSRNKREEVN NVLEEERESL SASNYPVSET AESTVGGRLK QKRQLINLGK  180
KQVKKAEKAN KCKKRKMDTE SDDSEAGTSS LVSEFTLTIK KSYVLFLGVP KRFAEMHMPK  240
EETVFKIHDT KGKKSWEVTY VVSKIQSRFS RGWPGLVKDF GLEVGDVCTF ELIKPTEMIL  300
TVSK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.49900.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610026.10.0PREDICTED: B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-113Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A078GG640.0A0A078GG64_BRANA; BnaC09g39750D protein
STRINGBo9g157490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-108VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]