PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00032588001 | ||||||||
Common Name | GSBRNA2T00114104001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 70aa MW: 8161.37 Da PI: 9.5858 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.5e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r +W++eE+e l+ ++ ++G+g W+ I + +Rt ++k++w++ GSBRNA2T00032588001 5 RRKWSAEEEEALLAGICKYGPGKWSYIINDPEfraqlSNRTNIDLKDKWRNM 56 789***************************9999***9************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.47 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-16 | 4 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.52E-18 | 6 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MYAQRRKWSA EEEEALLAGI CKYGPGKWSY IINDPEFRAQ LSNRTNIDLK DKWRNMTIKE 60 EAKTLVNKI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19035 | 1e-116 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00032588001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077814.1 | 1e-22 | Homeodomain-like/winged-helix DNA-binding family protein | ||||
Refseq | NP_177418.2 | 1e-22 | Homeodomain-like/winged-helix DNA-binding family protein | ||||
Refseq | XP_006416694.1 | 1e-22 | telomere repeat-binding factor 4 isoform X3 | ||||
Refseq | XP_024008305.1 | 1e-22 | telomere repeat-binding factor 4 isoform X1 | ||||
Refseq | XP_024008306.1 | 1e-22 | telomere repeat-binding factor 4 isoform X2 | ||||
Swissprot | F4IEY4 | 9e-24 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A397Y6S3 | 9e-44 | A0A397Y6S3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EQ23 | 9e-44 | M4EQ23_BRARP; Uncharacterized protein | ||||
STRING | Bra030894.1-P | 1e-44 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16580 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 4e-26 | MYB_related family protein |
Publications ? help Back to Top | |||
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