PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00032467001 | ||||||||
Common Name | GSBRNA2T00032467001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 35993.7 Da PI: 6.0564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.6e-50 | 18 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+d+elv++yL ++ g++++ + +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgk GSBRNA2T00032467001 18 LPPGFRFHPKDDELVCDYLMARSLGHNTKQPPplLLIQVDLNKCEPWDIPKAACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGK 107 79********************99998555332258999***********8777799********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++l+ kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl GSBRNA2T00032467001 108 DRAILR-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146 *****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-58 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 18 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 19 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
METEEEKGSS ISMVEAKLPP GFRFHPKDDE LVCDYLMARS LGHNTKQPPP LLLIQVDLNK 60 CEPWDIPKAA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM 120 RKTLVFYQGR APRGRKTDWV MHEFRLQGSF DPPNLNSPEV QEEDWVLCRV FHKKTEGLLS 180 RDNMGSCFDE TVSASLPPLM DSYINFDQEP SSYLGDDQHF ITSEQVPCFS NLSQNQTLTN 240 PVSEFKTPCK NNPIPLFTSG SAPATLPGLD SFCSSDQMVL RALLSQLTKI DGSIGAKESQ 300 SYGEGTSESL LTDIGIPSTA WN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-51 | 14 | 176 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00032467001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966749 | 0.0 | KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625043.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A078F7U9 | 0.0 | A0A078F7U9_BRANA; BnaC03g70990D protein | ||||
TrEMBL | A0A0D3BNE1 | 0.0 | A0A0D3BNE1_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g185760.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |