PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00032256001

Common Name

GSBRNA2T00032256001, GSBRNA2T00136430001, LOC106370739

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26656.2 Da PI: 7.5003

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00032256001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	78	130	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k GSBRNA2T00032256001 78 KKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWK 130 45699***********************************************9 PP
2	HD-ZIP_I/II	114	9.4e-37	77	167	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl++ q+++LE+sF+ee kL+++rK +l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++y+ +++e+++L++ev++Lr+ l GSBRNA2T00032256001 77 KKKRLTSGQLASLERSFQEEIKLDSDRKLKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYEVVSREKQMLHEEVKKLRALL 166 9**************************************************************************************877 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00032256001 167 R 167 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.568	72	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-19	74	136	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-16	74	136	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	76	143	IPR009057	Homeodomain-like
CDD	cd00086	2.44E-14	77	133	No hit	No description
Pfam	PF00046	5.4E-16	78	130	IPR001356	Homeobox domain
PRINTS	PR00031	5.6E-5	103	112	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	107	130	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.6E-5	112	128	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEWTTTRNLE NVRVAFMPPP WPESSSFNSL HSSNYDPYSG NSCTPTDAQI GPVISVPESE 60 KIINAYQFPS YDNEMIKKKR LTSGQLASLE RSFQEEIKLD SDRKLKLSRE LGLQPRQIAV 120 WFQNRRARWK AKQLEQLYDS LRQEYEVVSR EKQMLHEEVK KLRALLRDQG LIKKQISGGE 180 DMTEIPSVVI AHPRAENLNN NQINGENQIY VVDQYNNPML ITSSCWPPFP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00032256001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232522	1e-110	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666189.1	1e-171	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-141	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A078C1X8	1e-170	A0A078C1X8_BRANA; BnaCnng02570D protein
TrEMBL	A0A3P6DFT0	1e-170	A0A3P6DFT0_BRACM; Uncharacterized protein
STRING	Bra009510.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-126	homeobox 51

Link Out ? help Back to Top
Entrez Gene	106370739

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]