PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00031996001 | ||||||||
Common Name | GSBRNA2T00031996001, LOC106400230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 426aa MW: 47736.6 Da PI: 5.4459 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.5e-10 | 218 | 259 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + +++f L+ l+P++ +K++ a+i+ +A+++Ik+L GSBRNA2T00031996001 218 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDHIKEL 259 6**********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.36E-9 | 208 | 264 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-9 | 209 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.31E-12 | 209 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.624 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-6 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-7 | 218 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MEEGNMFEEI GCFDPNAPAD MTVESNFSPA EPPPPVLVAG STSNSNCSLE DLSEFHLSPQ 60 DCSLAAATAS VHQLHINTPS SCDQQLQSLM HQNFQDPAYA PQSNNWDNGY QEFVTLGPNH 120 TTPDLLSLLQ LPRSSLPPFA TPTLHDMIMT SSSASAAFDP LYHLNFPLQP PSGTLLGVED 180 QTEFNGVNSL IYAEENNTTE NGLNRKGRGS RKRKVFPTER ERRVHFKDRF GDLKNLIPNP 240 TKNDRASIVG EAIDHIKELL RTIEEFKMLL EKKRITRQRN KRGRIEVGEE DVGDENYNAQ 300 SEVVEQCLVN KKNNALRCSW LKRKSKFTEV DVRIIDDEVT IKIVQKKKIN CLLFVSKVID 360 QLQLDLHHVA GAQIGEHHSF LFNTKICEGS SVYASAIADR VMEVLEKQYM EALSSNNGYH 420 CYTSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | RQRNKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00031996001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584762.1 | 0.0 | PREDICTED: transcription factor bHLH89 | ||||
Refseq | XP_013696065.1 | 0.0 | transcription factor bHLH89 | ||||
Swissprot | Q9LND0 | 0.0 | BH089_ARATH; Transcription factor bHLH89 | ||||
TrEMBL | A0A078F9Z0 | 0.0 | A0A078F9Z0_BRANA; BnaC05g04240D protein | ||||
TrEMBL | A0A0D3C813 | 0.0 | A0A0D3C813_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EBF7 | 0.0 | A0A3P6EBF7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g007310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06170.2 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106400230 |
Publications ? help Back to Top | |||
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