PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030952001
Common NameGSBRNA2T00030952001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 328aa    MW: 36896.2 Da    PI: 4.6505
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030952001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-092703042155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yp+++++  LA+++gL+++q+ +WF N+R ++
  GSBRNA2T00030952001 270 KWPYPTEADKIALAEETGLDQKQINNWFINQRKRH 304
                          569*****************************885 PP

2ELK34.64e-12224245122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+qLlrK++++++sLk EFs
  GSBRNA2T00030952001 224 ELKDQLLRKFGSHISSLKLEFS 245
                          9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-1981125IPR005540KNOX1
PfamPF037906.5E-1983124IPR005540KNOX1
SMARTSM012563.3E-27132183IPR005541KNOX2
PfamPF037912.5E-25136182IPR005541KNOX2
SMARTSM011881.1E-6224245IPR005539ELK domain
PROSITE profilePS5121310.109224244IPR005539ELK domain
PfamPF037894.0E-9224245IPR005539ELK domain
PROSITE profilePS5007112.876244307IPR001356Homeobox domain
SuperFamilySSF466896.42E-20245317IPR009057Homeodomain-like
SMARTSM003896.2E-14246311IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27249308IPR009057Homeodomain-like
CDDcd000863.07E-13253308No hitNo description
PfamPF059207.7E-18264303IPR008422Homeobox KN domain
PROSITE patternPS000270282305IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDRMCGFRSA GDYSEKAELM MSSSESLMSL SDYHNLICSS AGENHVFGSN ELYSAAASAL  60
SSEVSIAPPA RRADQDNPSL GVIKSKIASH PLYPRLLQTY IDCQKVGAPL EIAYVLEEIQ  120
GENDVYKRDV APLSCFGADP ELDEFMETYC DILVKYKSDL ARPFDEATTF LNKIETQLQD  180
LCTGPASARG LSVSDDGAVS SDEELREGDD VATQDSQQRS NDRELKDQLL RKFGSHISSL  240
KLEFSKKKKK GKLPREARQA LLDWWNVHYK WPYPTEADKI ALAEETGLDQ KQINNWFINQ  300
RKRHWKPSQN MPFAMMDDSS ETFFTEE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, in the receptacle and developing pistil of flowers and in axillary buds of inflorescence stems.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030952001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX813530.0X81353.1 A.thaliana mRNA for ATK1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619273.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotP466400.0KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBLA0A078FBX00.0A0A078FBX0_BRANA; BnaC02g19900D protein
TrEMBLA0A3P6D4R30.0A0A3P6D4R3_BRAOL; Uncharacterized protein
STRINGBra007920.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.11e-167KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang XL,Yang ZP,Zhang J,Zhang LG
    Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
    Int J Mol Sci, 2013. 14(7): p. 14872-91
    [PMID:23863694]
  3. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  4. Scofield S,Dewitte W,Murray JA
    STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
    Plant Signal Behav, 2018.
    [PMID:24776954]
  5. Lee JE,Lampugnani ER,Bacic A,Golz JF
    SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    Plant J., 2014. 80(1): p. 122-35
    [PMID:25060324]
  6. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  7. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  8. Li Z, et al.
    Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
    J Integr Plant Biol, 2016. 58(12): p. 959-970
    [PMID:27273574]
  9. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]