PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00030952001 | ||||||||
Common Name | GSBRNA2T00030952001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 328aa MW: 36896.2 Da PI: 4.6505 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 270 | 304 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ GSBRNA2T00030952001 270 KWPYPTEADKIALAEETGLDQKQINNWFINQRKRH 304 569*****************************885 PP | |||||||
2 | ELK | 34.6 | 4e-12 | 224 | 245 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrK++++++sLk EFs GSBRNA2T00030952001 224 ELKDQLLRKFGSHISSLKLEFS 245 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.6E-19 | 81 | 125 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.5E-19 | 83 | 124 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.3E-27 | 132 | 183 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-25 | 136 | 182 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.1E-6 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.109 | 224 | 244 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.0E-9 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.876 | 244 | 307 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-20 | 245 | 317 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.2E-14 | 246 | 311 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 249 | 308 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.07E-13 | 253 | 308 | No hit | No description |
Pfam | PF05920 | 7.7E-18 | 264 | 303 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 282 | 305 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDRMCGFRSA GDYSEKAELM MSSSESLMSL SDYHNLICSS AGENHVFGSN ELYSAAASAL 60 SSEVSIAPPA RRADQDNPSL GVIKSKIASH PLYPRLLQTY IDCQKVGAPL EIAYVLEEIQ 120 GENDVYKRDV APLSCFGADP ELDEFMETYC DILVKYKSDL ARPFDEATTF LNKIETQLQD 180 LCTGPASARG LSVSDDGAVS SDEELREGDD VATQDSQQRS NDRELKDQLL RKFGSHISSL 240 KLEFSKKKKK GKLPREARQA LLDWWNVHYK WPYPTEADKI ALAEETGLDQ KQINNWFINQ 300 RKRHWKPSQN MPFAMMDDSS ETFFTEE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, in the receptacle and developing pistil of flowers and in axillary buds of inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00030952001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X81353 | 0.0 | X81353.1 A.thaliana mRNA for ATK1 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619273.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | P46640 | 0.0 | KNAT2_ARATH; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A078FBX0 | 0.0 | A0A078FBX0_BRANA; BnaC02g19900D protein | ||||
TrEMBL | A0A3P6D4R3 | 0.0 | A0A3P6D4R3_BRAOL; Uncharacterized protein | ||||
STRING | Bra007920.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 1e-167 | KNOTTED-like from Arabidopsis thaliana 2 |