PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030840001
Common NameGSBRNA2T00030840001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 407aa    MW: 46330.2 Da    PI: 6.516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030840001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.2e-50541792128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  GSBRNA2T00030840001  54 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 142
                          79***************************.89***************888889************************************* PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + s++ + +glkktLvfy+g+apkg++++W+m+eyrl
  GSBRNA2T00030840001 143 IRSETYRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 179
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-5553200IPR003441NAC domain
PROSITE profilePS5100555.53453200IPR003441NAC domain
PfamPF023657.7E-2555179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAIVPSTTSI ITMMSNQVNN NNEKGIEEDD HRGGHESRLQ NDDEADDHDQ DMVMPGFRFH  60
PTEEELIEFY LRRKVEGKRF NVELITFLDL YRYDPWELPA MAAIGEKEWY FYVPRDRKYR  120
NGDRPNRVTT SGYWKATGAD RMIRSETYRP IGLKKTLVFY SGKAPKGTRS SWIMNEYRLP  180
HHETEKYQKA ETSLCRVYKR PGVEDHPSLP RSTSTRLHNH NSSSSSRLAV RQQQQHLPSS  240
SNHSDNNLNN NNLDKLSTEY SGDGSTITTT NSNSDVTIAL ANQNIYRPMP FDASNTPIIS  300
NQEDDETAIV DDLQRLVNYS QISGGGNINH QYYQIAQQFH NQQLLKANAL QSVTAATTAA  360
LTPQTQATLA MNTIPAGTIP NNALWEMWNP LVPDGNKDHY TNIPYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56442008165NO APICAL MERISTEM PROTEIN
1ut4_B2e-56442008165NO APICAL MERISTEM PROTEIN
1ut7_A2e-56442008165NO APICAL MERISTEM PROTEIN
1ut7_B2e-56442008165NO APICAL MERISTEM PROTEIN
4dul_A2e-56442008165NAC domain-containing protein 19
4dul_B2e-56442008165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030840001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0008740.0BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129144.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
RefseqXP_013692009.10.0NAC domain-containing protein 35-like isoform X1
SwissprotQ9ZVP80.0NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A078FBR00.0A0A078FBR0_BRANA; BnaA02g26420D protein
STRINGBra026595.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.20.0NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]