PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00029783001
Common NameGSBRNA2T00029783001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 345aa    MW: 38054.7 Da    PI: 6.9876
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00029783001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.26.9e-24153197145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+ep+rC+RtDGKkWRCsr +++++k+CErH h++r rsrk++e+
  GSBRNA2T00029783001 153 DMEPWRCKRTDGKKWRCSRSAVPDQKYCERHTHKSRPRSRKHVES 197
                          79****************************************997 PP
2QLQ43.78.1e-1688122236
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          aF+ +Q+q+L++Q  +y y++a++PvPpeLl + +
  GSBRNA2T00029783001  88 AFSESQWQELERQRNIYEYIMASLPVPPELLTPFP 122
                          8******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.0E-887123IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.16488123IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-1088120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.08153197IPR014977WRC domain
PfamPF088791.8E-19154196IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
REVMIPSHHH HHYPSYISPS SYSGSAGVTD PVFSSSTNHA YTCSLGEMYS LAGSNSAAVS  60
AADPLFTLSS SGEMGRSMSE KEGAAAAAFS ESQWQELERQ RNIYEYIMAS LPVPPELLTP  120
FPKHPSHTYH HDVAKGGSLK LGITSNASNN AADMEPWRCK RTDGKKWRCS RSAVPDQKYC  180
ERHTHKSRPR SRKHVESSQH NDTRTTKNAA SHYAGTYPQL YGQPVNPFSN DHREFRWFMK  240
EDDSNANLNP AVGPSRELKL GFDYDLNFRQ EEALVNQSFG ALEGGGMEEA ERRRNQQDQW  300
VSHEGPSWIC YTSPGGPLAE ALFLGASNDP SASTTTSSCS RSSS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00029783001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5505432e-66EU550543.1 Arabidopsis thaliana isolate CS6714 GRL8 (GRL8) gene, partial cds.
GenBankEU5505442e-66EU550544.1 Arabidopsis thaliana isolate CS6732 GRL8 (GRL8) gene, partial cds.
GenBankEU5505452e-66EU550545.1 Arabidopsis thaliana isolate CS6751 GRL8 (GRL8) gene, partial cds.
GenBankEU5505462e-66EU550546.1 Arabidopsis thaliana isolate CS6781 GRL8 (GRL8) gene, partial cds.
GenBankEU5505472e-66EU550547.1 Arabidopsis thaliana isolate CS6796 GRL8 (GRL8) gene, partial cds.
GenBankEU5505482e-66EU550548.1 Arabidopsis thaliana isolate CS6797 GRL8 (GRL8) gene, partial cds.
GenBankEU5505492e-66EU550549.1 Arabidopsis thaliana isolate CS6799 GRL8 (GRL8) gene, partial cds.
GenBankEU5505502e-66EU550550.1 Arabidopsis thaliana isolate CS902 GRL8 (GRL8) gene, partial cds.
GenBankEU5505512e-66EU550551.1 Arabidopsis thaliana isolate CS6810 GRL8 (GRL8) gene, partial cds.
GenBankEU5505522e-66EU550552.1 Arabidopsis thaliana isolate CS6824 GRL8 (GRL8) gene, partial cds.
GenBankEU5505532e-66EU550553.1 Arabidopsis thaliana isolate CS6885 GRL8 (GRL8) gene, partial cds.
GenBankEU5505542e-66EU550554.1 Arabidopsis thaliana isolate CS6896 GRL8 (GRL8) gene, partial cds.
GenBankEU5505552e-66EU550555.1 Arabidopsis thaliana isolate CS6922 GRL8 (GRL8) gene, partial cds.
GenBankEU5505562e-66EU550556.1 Arabidopsis thaliana isolate CS906 GRL8 (GRL8) gene, partial cds.
GenBankEU5505572e-66EU550557.1 Arabidopsis thaliana isolate CS931 GRL8 (GRL8) gene, partial cds.
GenBankEU5505582e-66EU550558.1 Arabidopsis thaliana isolate CS1602 GRL8 (GRL8) gene, partial cds.
GenBankEU5505592e-66EU550559.1 Arabidopsis thaliana isolate CS6182 GRL8 (GRL8) gene, partial cds.
GenBankEU5505602e-66EU550560.1 Arabidopsis thaliana isolate CS6603 GRL8 (GRL8) gene, partial cds.
GenBankEU5505612e-66EU550561.1 Arabidopsis thaliana isolate CS6608 GRL8 (GRL8) gene, partial cds.
GenBankEU5505622e-66EU550562.1 Arabidopsis thaliana isolate CS6626 GRL8 (GRL8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140632.10.0PREDICTED: growth-regulating factor 8
SwissprotQ9SU441e-132GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A078K3H40.0A0A078K3H4_BRANA; BnaCnng77670D protein (Fragment)
STRINGBra013767.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-120growth-regulating factor 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]