PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00028380001 | ||||||||
Common Name | GSBRNA2T00028380001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 209aa MW: 22742.4 Da PI: 8.2857 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.8 | 2.8e-32 | 42 | 169 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 +++++++ h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a ++ + s++s+ + GSBRNA2T00028380001 42 QTKSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSN-G----Fwanet 126 67899*********************************************************9999955522222222.1....112223 PP TCP 89 ..........................................k 89 + GSBRNA2T00028380001 127 gfgivganptgggldlncgigflgfdfngssdmgfennqmpqD 169 3555555555556666666666666665555555555555541 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-25 | 45 | 196 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.632 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV 60 RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA TGTGIKPAAD SVSRSQVSNG 120 FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQDG VLNPLIYQQI 180 GQEQAKVLQH HHHHPHEAQQ ENADKQGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00028380001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634677.1 | 1e-140 | PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6 | ||||
Swissprot | Q9FLM6 | 1e-59 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | A0A078J987 | 1e-152 | A0A078J987_BRANA; BnaC01g43000D protein | ||||
STRING | Bo4g140760.1 | 1e-121 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 1e-57 | TCP family protein |
Publications ? help Back to Top | |||
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