PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028367001
Common NameGSBRNA2T00028367001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 287aa    MW: 30512.7 Da    PI: 6.172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028367001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-091156346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          W+ e+d  + +a + +  +    W++Ia+ ++ g++ +q+k+++  
  GSBRNA2T00028367001 11 VWSREDDIAFERALASYTDEseeKWEKIAADVP-GKSVEQIKEHYEV 56
                         6*****************99*************.**********965 PP
2Myb_DNA-binding42.12.1e-13118162347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00028367001 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.213762IPR017884SANT domain
SMARTSM007176.9E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-51057IPR009057Homeodomain-like
PfamPF002496.3E-81155IPR001005SANT/Myb domain
CDDcd001678.53E-91258No hitNo description
SuperFamilySSF466893.88E-101265IPR009057Homeodomain-like
PROSITE profilePS5129417.173111167IPR017930Myb domain
SuperFamilySSF466891.15E-16113168IPR009057Homeodomain-like
SMARTSM007173.2E-10115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-17115165IPR006447Myb domain, plants
PfamPF002492.5E-11118162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10118161IPR009057Homeodomain-like
CDDcd001677.65E-10118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MIVEEVSDGS VWSREDDIAF ERALASYTDE SEEKWEKIAA DVPGKSVEQI KEHYEVLVED  60
VGRIESGCVP LPDYGSPEGS NGYGDDGGSG KKGGNSHAGE SNQGSKAKSE QERRKGIAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITSVGDADVS TPQGPITGQN NNNGSTAVAG GANKSAKQAA SQPPPGPPPM YGTPTIGQPV  240
TGPLVSAVGT PVSLPAPPHL AFGVSGAPMN MGQMPYTTPR TPTAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-16980879RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028367001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529810.0AK352981.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680342.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-170SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078J8S60.0A0A078J8S6_BRANA; BnaA03g55780D protein
STRINGXP_006399351.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-149MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]