PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00028217001

Common Name

GSBRNA2T00028217001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 328aa MW: 37787.2 Da PI: 6.6831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00028217001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.2	2.1e-46	25	172	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..................kvkaeekewyfFskrdkkyatgk 72 pGfrFhPtdeelv +yL +kv kk +++e+i+++diyk++PwdLp+ +++eke yfF+kr +ky+++ GSBRNA2T00028217001 25 LPGFRFHPTDEELVGFYLSQKVLLKKsSKIDEIINQIDIYKFDPWDLPHvayvtyglatdqrcvwleGSRHTEKESYFFCKRGRKYRNSI 114 59*****************887774778888***********6689999999998888776444467799********** PP NAM 73 rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nr+t sg+Wkatg dk+++ +++++glkktLv+y g+a kg+ktdW+mhe+rl GSBRNA2T00028217001 115 RPNRVTGSGFWKATGIDKPIYLDgsSKAVIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 172 ******************8666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-47	24	209	IPR003441	NAC domain
PROSITE profile	PS51005	48.152	24	209	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	26	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEEMMGSWDK RREEQEEEEE QVLKLPGFRF HPTDEELVGF YLSQKVLLKK SSKIDEIINQ 60 IDIYKFDPWD LPHVAYVTYG LATDQRCVWL EGSRHTEKES YFFCKRGRKY RNSIRPNRVT 120 GSGFWKATGI DKPIYLDGSS KAVIGLKKTL VYYIGSAGKG SKTDWMMHEF RLPTANDTIP 180 GGSTSTHRSP TPSSLLHAEV WTLCRIFKRN ASSRKYTPDS KELASWERVK PQQSNNREAA 240 YISFGDNESS TNKINVMESK ENNERNVFQL HQTPHPHQPI PMEYTSSTQV DNTVSHISND 300 NNMDDVNYEN WDELRSVVEF AFGPSSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-41	15	215	10	174	NAC domain-containing protein 19
3swm_B	3e-41	15	215	10	174	NAC domain-containing protein 19
3swm_C	3e-41	15	215	10	174	NAC domain-containing protein 19
3swm_D	3e-41	15	215	10	174	NAC domain-containing protein 19
3swp_A	3e-41	15	215	10	174	NAC domain-containing protein 19
3swp_B	3e-41	15	215	10	174	NAC domain-containing protein 19
3swp_C	3e-41	15	215	10	174	NAC domain-containing protein 19
3swp_D	3e-41	15	215	10	174	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00028217001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189335	1e-115	AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013640073.1	0.0	transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A078J919	0.0	A0A078J919_BRANA; BnaA05g26290D protein
STRING	Bra034719.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-132	NAC family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]