PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00028020001 | ||||||||
Common Name | GSBRNA2T00028020001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16935.6 Da PI: 6.9309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H GSBRNA2T00028020001 50 FSCNYCQRKFYSSQALGGHQNAH 72 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.78E-6 | 47 | 77 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDFQPNTSLR LSLPSYKNHQ LNLELVLEPS STSSSSSTNS SSCLEQPRVF SCNYCQRKFY 60 SSQALGGHQN AHKLERTLAK KSRELFRSST TVDSDQRYPF SGRFEIYGRG YEGFVESGGR 120 MDFSGRGVSE SGLDQDQDQE MSHLDLSLRL * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00028020001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011482 | 1e-144 | AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2. | |||
GenBank | ATHZFPB | 1e-144 | L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-144 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126835.1 | 1e-106 | PREDICTED: zinc finger protein 2-like | ||||
Refseq | XP_013727659.1 | 1e-106 | zinc finger protein 2-like | ||||
Swissprot | Q39261 | 1e-82 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A078J2M8 | 1e-105 | A0A078J2M8_BRANA; BnaA02g35340D protein | ||||
TrEMBL | A0A398AFQ4 | 1e-105 | A0A398AFQ4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DV93 | 1e-105 | M4DV93_BRARP; Uncharacterized protein | ||||
STRING | Bra020437.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6621 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 6e-83 | zinc finger protein 2 |
Publications ? help Back to Top | |||
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