PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027754001
Common NameGSBRNA2T00027754001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 268aa    MW: 30391.6 Da    PI: 5.7092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027754001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.61.1e-4061363128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +GfrF Ptdeel++++Lk+k+ gk+  +++ i+ev i+++eP +Lp+  ++k+++  wyf s+++ k+++++ ++r+t sg+Wk+tgkd+
  GSBRNA2T00027754001   6 VGFRFCPTDEELINYFLKNKILGKPWLVDDKIREVSICSYEPASLPAlsMIKSKDLVWYFLSPKEYKSPKKSLTKRTTPSGFWKSTGKDR 95 
                          7************************999999***************4447788888********************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++    +g ++g+kktLv+++g++++++ t W+mhey++
  GSBRNA2T00027754001  96 KIKEDkrrDGVVIGIKKTLVYHEGKSSNAVPTPWIMHEYHI 136
                          ***986666777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.1914155IPR003441NAC domain
SuperFamilySSF1019418.11E-476155IPR003441NAC domain
PfamPF023652.5E-246136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
METSNVGFRF CPTDEELINY FLKNKILGKP WLVDDKIREV SICSYEPASL PALSMIKSKD  60
LVWYFLSPKE YKSPKKSLTK RTTPSGFWKS TGKDRKIKED KRRDGVVIGI KKTLVYHEGK  120
SSNAVPTPWI MHEYHITCLP LADQSTYVIC KLFYKGNVGD IPSGSNSTKP SHYLVISDSN  180
TVEATNTPPQ VEQAGQESLS GFSVNDVTML MNEQEDLSPW DTLCPIPNTL FIDNNDNTKI  240
ESLLADHQEF ITQENFEEYM LKWSCLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-25715718170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027754001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652235.11e-179NAC domain-containing protein 69-like
SwissprotQ9M1261e-89NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A078J8N80.0A0A078J8N8_BRANA; BnaA09g51630D protein
TrEMBLA0A3P5XTX40.0A0A3P5XTX4_BRACM; Uncharacterized protein
STRINGBra036328.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-86NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]