PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00027750001 | ||||||||
Common Name | GSBRNA2T00027750001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 452aa MW: 51808.2 Da PI: 9.603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.6 | 2e-39 | 5 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgk 88 p+G+rF+Pt el+++yLk+k+ +k ++++i+e++i+ ++P+ Lp+ k+++++ wyfF++r+ + ++ +k ++r+t sgyWkatg GSBRNA2T00027750001 5 PVGYRFSPTGLELINHYLKNKILDKLWLVNDAINEINICAHDPKFLPAlsKLDSKDLVWYFFCRREYHVSEkKKGTKRTTPSGYWKATGV 94 89************************999999***************5347777778********9998862667888************ PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ + kg ++g+kktLv+++g++ +g+ t Wvmhey++ GSBRNA2T00027750001 95 DRKIRE-KGVEIGIKKTLVYHEGKSTNGVWTPWVMHEYHI 133 *****9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-44 | 4 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.444 | 4 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-24 | 5 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MKKKPVGYRF SPTGLELINH YLKNKILDKL WLVNDAINEI NICAHDPKFL PALSKLDSKD 60 LVWYFFCRRE YHVSEKKKGT KRTTPSGYWK ATGVDRKIRE KGVEIGIKKT LVYHEGKSTN 120 GVWTPWVMHE YHITSLPPTQ RNYVICQVMY KGADGDSLYG NNSNELSHST MVSDLNTVRE 180 INTAPEVEQP REEDFYMSWD DLANPLNEQD DPSLFNPDTF FNDDYCPYQQ QPQAPCDDDY 240 ISKLLSFNGG NHADVLGDLD ITMQEHRNDH RPTKAFTGII VDCSSDNDAK SISATVSIFG 300 ISSTTNNPFR FTISYLGKGI KKRIGISFSQ LKDLLVGKKK LGRTFYLHLN KKIYMNSEIR 360 DYAFLKVKKK TRKPIKKFHY HFVSSSLKNR SIYIHVTPPG VSRQVVMISD RLKVGRKTLR 420 VQARAYGDLI CSDLDVGGLP EMDTSRRRFF L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-21 | 5 | 133 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 368 | 376 | KKTRKPIKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00027750001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420439 | 0.0 | KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111374.2 | 0.0 | PREDICTED: NAC domain-containing protein 69-like | ||||
Swissprot | Q9M126 | 1e-108 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | A0A078J626 | 0.0 | A0A078J626_BRANA; BnaA09g51610D protein | ||||
STRING | Bra036326.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 1e-104 | NAC domain containing protein 69 |
Publications ? help Back to Top | |||
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