PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00027636001 | ||||||||
Common Name | GSBRNA2T00027636001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 29683.9 Da PI: 8.106 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.1 | 5.4e-30 | 177 | 232 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+ Fv+a++qLGG+ +A+Pk+i+e+m+ ++Lt+++vkSHLQkYRl+ GSBRNA2T00027636001 177 KQRRCWTPELHRLFVDALQQLGGPGVAIPKQIREHMQEESLTNDEVKSHLQKYRLH 232 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.58 | 174 | 234 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-17 | 175 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-26 | 176 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-25 | 177 | 232 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 179 | 230 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGSLGDELSL GQRRHTSKIM NVAVEKGCKL EEHVKKLEEE KRKIQGSELE LPLCLQILND 60 AISYLKKETE TDTQPLLKDF ISLSKPIREE HDEEGEELFK EKKFQLWREN DHISNARFSD 120 TKIKNTLEIE RDEEKSSNSL YMLLSPGMTT PKGRRKLVAS SFVPQPPPYL QQQALRKQRR 180 CWTPELHRLF VDALQQLGGP GVAIPKQIRE HMQEESLTND EVKSHLQKYR LHIRKSDSNL 240 EKQSVVVLGF NLWNSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00027636001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221631 | 3e-70 | AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04. | |||
GenBank | AY086694 | 3e-70 | AY086694.1 Arabidopsis thaliana clone 2686 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584006.1 | 1e-174 | PREDICTED: two-component response regulator ARR2 | ||||
Swissprot | Q9FX84 | 3e-99 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A078J5W2 | 0.0 | A0A078J5W2_BRANA; BnaC05g51600D protein | ||||
STRING | Bo5g076300.1 | 1e-174 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13927 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 1e-78 | G2-like family protein |
Publications ? help Back to Top | |||
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