PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027433001
Common NameGSBRNA2T00027433001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 327aa    MW: 36615.1 Da    PI: 9.9647
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027433001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.5e-1258106155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a  +++g
  GSBRNA2T00027433001  58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAVHRFRG 106
                          89****9888.8*********3.....5**********99***********9998 PP
2B3101.25.9e-32168272199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+ tpsdv+k++rlv+pk++ae++      ++++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++
  GSBRNA2T00027433001 168 FEKAVTPSDVGKLNRLVIPKHHAEKYfplppsSNVSVKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSR 257
                          89*************************99999778889***************************************************9 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          ++ ++++l++++ ++
  GSBRNA2T00027433001 258 SDGQDQQLYIGWKSR 272
                          877999999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-2458116No hitNo description
SuperFamilySSF541712.22E-1658115IPR016177DNA-binding domain
PfamPF008473.5E-758106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1959115IPR001471AP2/ERF domain
SMARTSM003805.8E-2759120IPR001471AP2/ERF domain
PROSITE profilePS5103219.88859114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-40160275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-31164274IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-28167260No hitNo description
SMARTSM010191.4E-26168273IPR003340B3 DNA binding domain
PROSITE profilePS5086314.339168273IPR003340B3 DNA binding domain
PfamPF023623.3E-29168272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEVSSVDEST TSTCSIYETP AITPAKTSVN LHRMGSGSSV VLDAENGAEA ESRKLPSSKY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VHRFRGRDAV TNFKDARLDD  120
GEVEFLNTHS KSEIVDMLRK HTYSEELEQS KRRRNGSGNA FRSAVSLFEK AVTPSDVGKL  180
NRLVIPKHHA EKYFPLPPSS NVSVKGVLLN FEDVAGKVWR FRYSYWNSSQ SYVLTKGWSR  240
FVKEKNLRAG DVVSFSRSDG QDQQLYIGWK SRSGSDVETG RVLRLFGVNI SPAGSRNDVV  300
GNKRVVNDTE MLSLVCSKKR RIFHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-7116427910124DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.184470.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027433001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530750.0AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731100.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A078K3340.0A0A078K334_BRANA; BnaAnng40580D protein
STRINGBra026917.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  4. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  5. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]