PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027253001

Common Name

GSBRNA2T00027253001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 454aa MW: 50330 Da PI: 7.6154

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027253001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	152	212	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ GSBRNA2T00027253001 152 KDQAINCPRCNSVNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 212 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	145	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-33	153	210	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	156	210	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	158	194	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MRIKVFVYFE YDKDSHSECF SSFIIQFSLS LSLSLPPTTP TLSHSTTPHI CYLFYILNIR 60 FFSLYPLSVC FFLFMFLVKA FLKFPNHLYL DEKLFILVGR VDFCDFDDQE IVVKPLEEIV 120 TNTCPTQQAS QPQPPPSVGA AGVAERKTRP EKDQAINCPR CNSVNTKFCY YNNYSLTQPR 180 FFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSISSSS DISKNHSDST QPATKKHHSD 240 HHPHHHLMSI SQQGLTGQNP KTFETTQQDL NLGFPPHGLI RTNFTNLIHN TGNNNTSTNN 300 PFLGSSCSAT SALATSPLDL IRNNNCNNRN TSNSSFMGFP VHNQGPTSEG FSMQDHYKPS 360 NSNTTLLGFS LDHHHDNSEF HGGFQGGEGR EVGDDVNGRH LFPFEDLKLP VSSSSSATIN 420 IDVNDHQKRA SGGDAAATSG GYWTGMLSGG SWC*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MRIKVFVYFE YDKDSHSECF SSFIIQFSLS LSLSLPPTTP TLSHSTTPHI CYLFYILNIR  60
FFSLYPLSVC FFLFMFLVKA FLKFPNHLYL DEKLFILVGR VDFCDFDDQE IVVKPLEEIV  120
TNTCPTQQAS QPQPPPSVGA AGVAERKTRP EKDQAINCPR CNSVNTKFCY YNNYSLTQPR  180
FFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSISSSS DISKNHSDST QPATKKHHSD  240
HHPHHHLMSI SQQGLTGQNP KTFETTQQDL NLGFPPHGLI RTNFTNLIHN TGNNNTSTNN  300
PFLGSSCSAT SALATSPLDL IRNNNCNNRN TSNSSFMGFP VHNQGPTSEG FSMQDHYKPS  360
NSNTTLLGFS LDHHHDNSEF HGGFQGGEGR EVGDDVNGRH LFPFEDLKLP VSSSSSATIN  420
IDVNDHQKRA SGGDAAATSG GYWTGMLSGG SWC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027253001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625331.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-158	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A078GJL8	0.0	A0A078GJL8_BRANA; BnaA08g15120D protein
STRING	Bo3g154260.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-127	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]